Information for 9-GCGCAGCGGAGCGTCC (Motif 10)

A C T G A G T C A C T G A G T C C T G A A C T G A T G C A C T G A T C G C T G A A C T G A T G C A C T G A G C T A G T C A G T C
Reverse Opposite:
A C T G A C T G C T G A A G T C A T C G A G T C A G C T A T G C A G T C A T C G A G T C A G C T A C T G A G T C A C T G A G T C
p-value:1e-11
log p-value:-2.556e+01
Information Content per bp:1.884
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.68%
Number of Background Sequences with motif0.4
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets59.6 +/- 20.7bp
Average Position of motif in Background56.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ZIC3/MA0697.1/Jaspar

Match Rank:1
Score:0.72
Offset:0
Orientation:reverse strand
Alignment:GCGCAGCGGAGCGTCC
NCGCAGCGGGGGGTC-
 A C T G A G T C A C T G A G T C C T G A A C T G A T G C A C T G A T C G C T G A A C T G A T G C A C T G A G C T A G T C A G T C
C A T G G T A C C T A G G A T C T G C A T C A G A G T C C T A G A C T G A C T G C A T G C A T G C A T G A G C T T G A C A C G T

ZIC1/MA0696.1/Jaspar

Match Rank:2
Score:0.69
Offset:1
Orientation:reverse strand
Alignment:GCGCAGCGGAGCGTCC
-CACAGCGGGGGGTC-
 A C T G A G T C A C T G A G T C C T G A A C T G A T G C A C T G A T C G C T G A A C T G A T G C A C T G A G C T A G T C A G T C
A C G T T G A C C T G A A G T C T G C A T C A G A G T C C T A G C A T G T C A G C A T G C A T G C A T G A G C T T G A C A C G T

ZIC4/MA0751.1/Jaspar

Match Rank:3
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:GCGCAGCGGAGCGTCC
NCNCAGCGGGGGGTC-
 A C T G A G T C A C T G A G T C C T G A A C T G A T G C A C T G A T C G C T G A A C T G A T G C A C T G A G C T A G T C A G T C
C A T G T G A C C T G A G A T C G T C A T C A G G A T C C T A G C A T G C A T G C A T G C A T G C A T G A G C T T G A C A C G T

GLIS2/MA0736.1/Jaspar

Match Rank:4
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:GCGCAGCGGAGCGTCC
-CTTCGCGGGGGGTC-
 A C T G A G T C A C T G A G T C C T G A A C T G A T G C A C T G A T C G C T G A A C T G A T G C A C T G A G C T A G T C A G T C
A C G T T A G C C A G T G A C T G A T C T C A G G A T C C T A G C A T G A C T G C T A G C A T G C T A G A G C T T G A C A C G T

PB0199.1_Zfp161_2/Jaspar

Match Rank:5
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---GCGCAGCGGAGCGTCC
GCCGCGCAGTGCGT-----
 A C G T A C G T A C G T A C T G A G T C A C T G A G T C C T G A A C T G A T G C A C T G A T C G C T G A A C T G A T G C A C T G A G C T A G T C A G T C
C A T G G A T C A G T C T A C G G A T C C T A G T G A C G T C A C T A G A C G T C T A G G T A C T C A G A G C T A C G T A C G T A C G T A C G T A C G T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:6
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:GCGCAGCGGAGCGTCC
DCHCAGCAGGRGGCC-
 A C T G A G T C A C T G A G T C C T G A A C T G A T G C A C T G A T C G C T G A A C T G A T G C A C T G A G C T A G T C A G T C
C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C A C G T

POL013.1_MED-1/Jaspar

Match Rank:7
Score:0.53
Offset:6
Orientation:reverse strand
Alignment:GCGCAGCGGAGCGTCC
------CGGAGC----
 A C T G A G T C A C T G A G T C C T G A A C T G A T G C A C T G A T C G C T G A A C T G A T G C A C T G A G C T A G T C A G T C
A C G T A C G T A C G T A C G T A C G T A C G T A T G C A C T G A C T G C G T A A C T G A G T C A C G T A C G T A C G T A C G T

PAX5/MA0014.2/Jaspar

Match Rank:8
Score:0.51
Offset:-2
Orientation:forward strand
Alignment:--GCGCAGCGGAGCGTCC-
GAGGGCAGCCAAGCGTGAC
 A C G T A C G T A C T G A G T C A C T G A G T C C T G A A C T G A T G C A C T G A T C G C T G A A C T G A T G C A C T G A G C T A G T C A G T C A C G T
T C A G C G T A T C A G C T A G A C T G G A T C C T G A T A C G A G T C T A G C T C G A C T G A A T C G A G T C C T A G C A G T C T A G C T G A G T A C

PB0052.1_Plagl1_1/Jaspar

Match Rank:9
Score:0.51
Offset:4
Orientation:reverse strand
Alignment:GCGCAGCGGAGCGTCC----
----NNNGGGGCGCCCCCNN
 A C T G A G T C A C T G A G T C C T G A A C T G A T G C A C T G A T C G C T G A A C T G A T G C A C T G A G C T A G T C A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A T G C A G C T T G C A C T A G C A T G C T A G A C T G A T G C A T C G T G A C G A T C G T A C G A T C G A T C C T G A T G C A

NHLH1/MA0048.2/Jaspar

Match Rank:10
Score:0.50
Offset:1
Orientation:reverse strand
Alignment:GCGCAGCGGAGCGTCC
-CGCAGCTGCG-----
 A C T G A G T C A C T G A G T C C T G A A C T G A T G C A C T G A T C G C T G A A C T G A T G C A C T G A G C T A G T C A G T C
A C G T T G A C C T A G A T G C T C G A A T C G T A G C A C G T A C T G A G T C A C T G A C G T A C G T A C G T A C G T A C G T