Information for 4-GCCAAACHGGTTC (Motif 5)

A T C G G A T C T A G C G T C A T C G A C T G A A G T C G A C T C T A G A C T G A G C T A G C T G A T C
Reverse Opposite:
C T A G C T G A C T G A A G T C A G T C C T G A A C T G A G C T A G C T C A G T A T C G C T A G A T G C
p-value:1e-23
log p-value:-5.431e+01
Information Content per bp:1.696
Number of Target Sequences with motif31.0
Percentage of Target Sequences with motif3.86%
Number of Background Sequences with motif141.3
Percentage of Background Sequences with motif0.29%
Average Position of motif in Targets57.2 +/- 20.2bp
Average Position of motif in Background52.1 +/- 31.1bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.10
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

TFCP2/MA0145.3/Jaspar

Match Rank:1
Score:0.83
Offset:3
Orientation:forward strand
Alignment:GCCAAACHGGTTC
---AAACCGGTTT
 A T C G G A T C T A G C G T C A T C G A C T G A A G T C G A C T C T A G A C T G A G C T A G C T G A T C
A C G T A C G T A C G T T C G A C G T A C G T A T A G C G A T C C T A G A T C G G C A T G A C T G A C T

GRHL1/MA0647.1/Jaspar

Match Rank:2
Score:0.81
Offset:2
Orientation:forward strand
Alignment:GCCAAACHGGTTC-
--AAAACCGGTTTT
 A T C G G A T C T A G C G T C A T C G A C T G A A G T C G A C T C T A G A C T G A G C T A G C T G A T C A C G T
A C G T A C G T G T C A C G T A C T G A C G T A A G T C G T A C C T A G A T C G G C A T G A C T G C A T C G A T

GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer

Match Rank:3
Score:0.74
Offset:-7
Orientation:reverse strand
Alignment:-------GCCAAACHGGTTC
VAAACYKGTHWAACMRGTTT
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T C G G A T C T A G C G T C A T C G A C T G A A G T C G A C T C T A G A C T G A G C T A G C T G A T C
T C G A C T G A C T G A C G T A T A G C G A C T C A T G T C A G G C A T G C A T C G T A C T G A C T G A A G T C G T A C C T A G A T C G G A C T G A C T A G C T

PH0040.1_Hmbox1/Jaspar

Match Rank:4
Score:0.60
Offset:1
Orientation:forward strand
Alignment:GCCAAACHGGTTC-----
-GAAAACTAGTTAACATC
 A T C G G A T C T A G C G T C A T C G A C T G A A G T C G A C T C T A G A C T G A G C T A G C T G A T C A C G T A C G T A C G T A C G T A C G T
A C G T T C A G G C T A C T G A C T G A C G T A A G T C A C G T C T G A C T A G A C G T G C A T C G T A C G T A A G T C C G T A C G A T A T G C

SNAI2/MA0745.1/Jaspar

Match Rank:5
Score:0.60
Offset:4
Orientation:forward strand
Alignment:GCCAAACHGGTTC
----AACAGGTGT
 A T C G G A T C T A G C G T C A T C G A C T G A A G T C G A C T C T A G A C T G A G C T A G C T G A T C
A C G T A C G T A C G T A C G T C T G A C T G A G T A C G C T A C T A G C T A G G A C T C A T G A G C T

Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer

Match Rank:6
Score:0.58
Offset:2
Orientation:forward strand
Alignment:GCCAAACHGGTTC---------
--NAAACCGGTTNNAACCGGTT
 A T C G G A T C T A G C G T C A T C G A C T G A A G T C G A C T C T A G A C T G A G C T A G C T G A T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T T G A C T C G A C T G A C T G A A T G C G A T C C T A G T A C G G A C T G A C T G A T C T C G A C T G A C T G A A T G C G A T C C T A G A T C G G A C T G A C T

SCRT2/MA0744.1/Jaspar

Match Rank:7
Score:0.55
Offset:0
Orientation:forward strand
Alignment:GCCAAACHGGTTC
ATGCAACAGGTGG
 A T C G G A T C T A G C G T C A T C G A C T G A A G T C G A C T C T A G A C T G A G C T A G C T G A T C
T C G A G C A T A C T G G T A C T G C A C G T A G T A C G T C A T C A G A T C G G C A T C A T G A T C G

SCRT1/MA0743.1/Jaspar

Match Rank:8
Score:0.54
Offset:0
Orientation:forward strand
Alignment:GCCAAACHGGTTC--
GAGCAACAGGTGGTT
 A T C G G A T C T A G C G T C A T C G A C T G A A G T C G A C T C T A G A C T G A G C T A G C T G A T C A C G T A C G T
T C A G G C T A A C T G G A T C G T C A C G T A G T A C C G T A C T A G A C T G A G C T C A T G A C T G A G C T G A C T

NFIX/MA0671.1/Jaspar

Match Rank:9
Score:0.52
Offset:-3
Orientation:forward strand
Alignment:---GCCAAACHGGTTC
CGTGCCAAG-------
 A C G T A C G T A C G T A T C G G A T C T A G C G T C A T C G A C T G A A G T C G A C T C T A G A C T G A G C T A G C T G A T C
T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:10
Score:0.51
Offset:1
Orientation:reverse strand
Alignment:GCCAAACHGGTTC
-CCAGACAG----
 A T C G G A T C T A G C G T C A T C G A C T G A A G T C G A C T C T A G A C T G A G C T A G C T G A T C
A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T A C G T A C G T A C G T