Information for 8-RTCAGAGAMCRTG (Motif 9)

C T A G A C G T A G T C C G T A A C T G C G T A A C T G C G T A G T A C A G T C C T G A A C G T A C T G
Reverse Opposite:
A G T C C G T A A G C T A C T G A C T G C G A T A G T C C G A T A G T C A C G T A C T G C G T A G A C T
p-value:1e-11
log p-value:-2.731e+01
Information Content per bp:1.891
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.79%
Number of Background Sequences with motif2.5
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets57.5 +/- 26.9bp
Average Position of motif in Background30.5 +/- 7.9bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:1
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:RTCAGAGAMCRTG--
-TCAGNGAGCGTGAC
 C T A G A C G T A G T C C G T A A C T G C G T A A C T G C G T A G T A C A G T C C T G A A C G T A C T G A C G T A C G T
A C G T A C G T T A G C T C G A A T C G T A C G T C A G C T G A A T C G A G T C C T A G G A C T C T A G C T G A T G A C

PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer

Match Rank:2
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-RTCAGAGAMCRTG
GGTTAGAGACCT--
 A C G T C T A G A C G T A G T C C G T A A C T G C G T A A C T G C G T A G T A C A G T C C T G A A C G T A C T G
C T A G T A C G C G A T A C G T C G T A T C A G C T G A T C A G G T C A T G A C A G T C G A C T A C G T A C G T

NR2C2/MA0504.1/Jaspar

Match Rank:3
Score:0.55
Offset:-4
Orientation:forward strand
Alignment:----RTCAGAGAMCRTG
AGGGGTCAGAGGTCA--
 A C G T A C G T A C G T A C G T C T A G A C G T A G T C C G T A A C T G C G T A A C T G C G T A G T A C A G T C C T G A A C G T A C T G
T G C A T C A G T C A G A C T G C A T G C A G T A T G C C T G A C T A G C T G A C T A G C A T G A C G T A G T C C T G A A C G T A C G T

HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer

Match Rank:4
Score:0.54
Offset:-5
Orientation:forward strand
Alignment:-----RTCAGAGAMCRTG
CANAGNNCAAAGTCCA--
 A C G T A C G T A C G T A C G T A C G T C T A G A C G T A G T C C G T A A C T G C G T A A C T G C G T A G T A C A G T C C T G A A C G T A C T G
G T A C G C T A T C A G C T G A C T A G C A T G A G C T G A T C T G C A T C G A C T G A A C T G C A G T A G T C G A T C G C T A A C G T A C G T

TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer

Match Rank:5
Score:0.54
Offset:-3
Orientation:forward strand
Alignment:---RTCAGAGAMCRTG
GAGGTCAAAGGTCA--
 A C G T A C G T A C G T C T A G A C G T A G T C C G T A A C T G C G T A A C T G C G T A G T A C A G T C C T G A A C G T A C T G
T C A G C T G A C T A G C A T G A C G T A T G C C T G A C T G A C T G A C T A G C A T G A C G T A T G C C T G A A C G T A C G T

HNF4G/MA0484.1/Jaspar

Match Rank:6
Score:0.53
Offset:-4
Orientation:forward strand
Alignment:----RTCAGAGAMCRTG
AGAGTCCAAAGTCCA--
 A C G T A C G T A C G T A C G T C T A G A C G T A G T C C G T A A C T G C G T A A C T G C G T A G T A C A G T C C T G A A C G T A C T G
C G T A T C A G C T G A C T A G C A G T A G T C A G T C T G C A T C G A C T G A C A T G C A G T A G T C G A T C G C T A A C G T A C G T

FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer

Match Rank:7
Score:0.53
Offset:-2
Orientation:forward strand
Alignment:--RTCAGAGAMCRTG
AGGTCANTGACCTN-
 A C G T A C G T C T A G A C G T A G T C C G T A A C T G C G T A A C T G C G T A G T A C A G T C C T G A A C G T A C T G
T C G A C A T G C A T G A C G T A T G C T C G A C T G A A G C T T A C G T G C A G T A C G A T C A G C T A G T C A C G T

PB0084.1_Tcf7l2_1/Jaspar

Match Rank:8
Score:0.52
Offset:-5
Orientation:reverse strand
Alignment:-----RTCAGAGAMCRTG
NNNAGATCAAAGGANNN-
 A C G T A C G T A C G T A C G T A C G T C T A G A C G T A G T C C G T A A C T G C G T A A C T G C G T A G T A C A G T C C T G A A C G T A C T G
A C G T G C T A G C A T C G T A A T C G C G T A C G A T T A G C C G T A C G T A C G T A T C A G T C A G T C G A G T C A G C T A G C A T A C G T

Hnf4a/MA0114.3/Jaspar

Match Rank:9
Score:0.52
Offset:-3
Orientation:forward strand
Alignment:---RTCAGAGAMCRTG
GGGGTCAAAGTCCAAT
 A C G T A C G T A C G T C T A G A C G T A G T C C G T A A C T G C G T A A C T G C G T A G T A C A G T C C T G A A C G T A C T G
T C A G T C A G C T A G C A T G C A G T A G T C T C G A C T G A C T G A A C T G A C G T A G T C A G T C C T G A T C G A G A C T

PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer

Match Rank:10
Score:0.51
Offset:0
Orientation:reverse strand
Alignment:RTCAGAGAMCRTG
GAAAGTGAAAGT-
 C T A G A C G T A G T C C G T A A C T G C G T A A C T G C G T A G T A C A G T C C T G A A C G T A C T G
T C A G C G T A T G C A C T G A C T A G C G A T C T A G G C T A T C G A C G T A A C T G A G C T A C G T