Information for 5-AAATGACACT (Motif 5)

C G T A G T C A C G T A A C G T A C T G C T G A A G T C C G T A G T A C A G C T
Reverse Opposite:
C T G A A C T G C G A T A C T G A G C T A G T C C G T A C G A T A C G T G C A T
p-value:1e-13
log p-value:-3.147e+01
Information Content per bp:1.825
Number of Target Sequences with motif16.0
Percentage of Target Sequences with motif2.11%
Number of Background Sequences with motif64.6
Percentage of Background Sequences with motif0.14%
Average Position of motif in Targets53.4 +/- 28.6bp
Average Position of motif in Background48.9 +/- 25.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0164.1_Six4/Jaspar

Match Rank:1
Score:0.78
Offset:-2
Orientation:forward strand
Alignment:--AAATGACACT-----
ATAAATGACACCTATCA
 A C G T A C G T C G T A G T C A C G T A A C G T A C T G C T G A A G T C C G T A G T A C A G C T A C G T A C G T A C G T A C G T A C G T
G C T A C A G T C T G A G T C A G C T A A G C T C A T G G T C A A G T C G T C A G T A C A G T C A G C T G T C A A G C T A G T C T C G A

Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer

Match Rank:2
Score:0.75
Offset:0
Orientation:reverse strand
Alignment:AAATGACACT
ARNTGACA--
 C G T A G T C A C G T A A C G T A C T G C T G A A G T C C G T A G T A C A G C T
T G C A C T A G G A T C A C G T C T A G C G T A G T A C T C G A A C G T A C G T

MEIS1/MA0498.2/Jaspar

Match Rank:3
Score:0.75
Offset:2
Orientation:forward strand
Alignment:AAATGACACT
--TTGACAG-
 C G T A G T C A C G T A A C G T A C T G C T G A A G T C C G T A G T A C A G C T
A C G T A C G T G C A T G C A T A T C G T G C A A G T C C T G A C T A G A C G T

MAFG::NFE2L1/MA0089.1/Jaspar

Match Rank:4
Score:0.72
Offset:1
Orientation:forward strand
Alignment:AAATGACACT
-CATGAC---
 C G T A G T C A C G T A A C G T A C T G C T G A A G T C C G T A G T A C A G C T
A C G T T A G C T C G A A C G T C A T G C G T A A G T C A C G T A C G T A C G T

MEIS3/MA0775.1/Jaspar

Match Rank:5
Score:0.69
Offset:2
Orientation:forward strand
Alignment:AAATGACACT
--TTGACAGG
 C G T A G T C A C G T A A C G T A C T G C T G A A G T C C G T A G T A C A G C T
A C G T A C G T C G A T G C A T A T C G C T G A G A T C C T G A A C T G A T C G

Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer

Match Rank:6
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:AAATGACACT
-RHTGWCAR-
 C G T A G T C A C G T A A C G T A C T G C T G A A G T C C G T A G T A C A G C T
A C G T C T A G G T A C A G C T C T A G G C T A G A T C C G T A C T G A A C G T

Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:7
Score:0.67
Offset:3
Orientation:reverse strand
Alignment:AAATGACACT-
---TGACACCT
 C G T A G T C A C G T A A C G T A C T G C T G A A G T C C G T A G T A C A G C T A C G T
A C G T A C G T A C G T G A C T T C A G C T G A A G T C C T G A T A G C G A T C G A C T

Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer

Match Rank:8
Score:0.66
Offset:1
Orientation:reverse strand
Alignment:AAATGACACT-
-KTTCACACCT
 C G T A G T C A C G T A A C G T A C T G C T G A A G T C C G T A G T A C A G C T A C G T
A C G T C A G T C A G T A C G T T A G C G C T A A G T C C T G A G T A C G A T C G C A T

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:9
Score:0.66
Offset:0
Orientation:forward strand
Alignment:AAATGACACT
VGCTGWCAVB
 C G T A G T C A C G T A A C G T A C T G C T G A A G T C C G T A G T A C A G C T
T C A G T A C G T A G C A C G T A C T G C G A T A G T C C G T A T A C G A G T C

Pax2/MA0067.1/Jaspar

Match Rank:10
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:AAATGACACT
NCGTGACN--
 C G T A G T C A C G T A A C G T A C T G C T G A A G T C C G T A G T A C A G C T
T A C G G T A C C T A G A G C T T C A G C G T A G A T C C G A T A C G T A C G T