Information for 19-KYGKAKSCTGCCATGC (Motif 30)

C A G T A G C T C T A G A C T G C T G A A C T G A T C G A G T C C G A T A C T G A G T C A G T C C G T A A C G T A C T G A G T C
Reverse Opposite:
A C T G G T A C C G T A A C G T A C T G C T A G A G T C C G T A A C T G A T G C G T A C A G C T G T A C A G T C C T G A G T A C
p-value:1e-8
log p-value:-1.976e+01
Information Content per bp:1.855
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.53%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets40.5 +/- 8.6bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:1
Score:0.58
Offset:7
Orientation:forward strand
Alignment:KYGKAKSCTGCCATGC
-------TTGCCAAG-
 C A G T A G C T C T A G A C T G C T G A A C T G A T C G A G T C C G A T A C T G A G T C A G T C C G T A A C G T A C T G A G T C
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G A C G T

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:2
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-KYGKAKSCTGCCATGC
CTGGCAGNCTGCCA---
 A C G T C A G T A G C T C T A G A C T G C T G A A C T G A T C G A G T C C G A T A C T G A G T C A G T C C G T A A C G T A C T G A G T C
A G T C C G A T A C T G A T C G T G A C G C T A C A T G A T C G T G A C C G A T A C T G T A G C G T A C G T C A A C G T A C G T A C G T

PB0147.1_Max_2/Jaspar

Match Rank:3
Score:0.54
Offset:7
Orientation:forward strand
Alignment:KYGKAKSCTGCCATGC-----
-------GTGCCACGCGACTG
 C A G T A G C T C T A G A C T G C T G A A C T G A T C G A G T C C G A T A C T G A G T C A G T C C G T A A C G T A C T G A G T C A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G A G C T A C T G G A T C A G T C C G T A A G T C T C A G G A T C A C T G T C G A T G A C C A G T C A T G

MEIS2/MA0774.1/Jaspar

Match Rank:4
Score:0.54
Offset:6
Orientation:reverse strand
Alignment:KYGKAKSCTGCCATGC
------GCTGTCAA--
 C A G T A G C T C T A G A C T G C T G A A C T G A T C G A G T C C G A T A C T G A G T C A G T C C G T A A C G T A C T G A G T C
A C G T A C G T A C G T A C G T A C G T A C G T A T C G A T G C A C G T C A T G G C A T A G T C G T C A G C T A A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:5
Score:0.54
Offset:6
Orientation:forward strand
Alignment:KYGKAKSCTGCCATGC
------CGTGCCAAG-
 C A G T A G C T C T A G A C T G C T G A A C T G A T C G A G T C C G A T A C T G A G T C A G T C C G T A A C G T A C T G A G T C
A C G T A C G T A C G T A C G T A C G T A C G T T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T

MEIS3/MA0775.1/Jaspar

Match Rank:6
Score:0.53
Offset:6
Orientation:reverse strand
Alignment:KYGKAKSCTGCCATGC
------CCTGTCAA--
 C A G T A G C T C T A G A C T G C T G A A C T G A T C G A G T C C G A T A C T G A G T C A G T C C G T A A C G T A C T G A G T C
A C G T A C G T A C G T A C G T A C G T A C G T T A G C T G A C G A C T C T A G G A C T A T G C C G T A G C T A A C G T A C G T

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:7
Score:0.53
Offset:5
Orientation:forward strand
Alignment:KYGKAKSCTGCCATGC---
-----NGTTGCCATGGCAA
 C A G T A G C T C T A G A C T G C T G A A C T G A T C G A G T C C G A T A C T G A G T C A G T C C G T A A C G T A C T G A G T C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C T G T C A G A G C T G A C T C A T G A G T C A G T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A

PB0029.1_Hic1_1/Jaspar

Match Rank:8
Score:0.53
Offset:1
Orientation:reverse strand
Alignment:KYGKAKSCTGCCATGC-
-NGTAGGTTGGCATNNN
 C A G T A G C T C T A G A C T G C T G A A C T G A T C G A G T C C G A T A C T G A G T C A G T C C G T A A C G T A C T G A G T C A C G T
A C G T C T A G C T A G A G C T C G T A T C A G T C A G A C G T C A G T A C T G A T C G A G T C C G T A G A C T T G C A T C A G G C A T

NFIC/MA0161.1/Jaspar

Match Rank:9
Score:0.53
Offset:8
Orientation:reverse strand
Alignment:KYGKAKSCTGCCATGC
--------TGCCAA--
 C A G T A G C T C T A G A C T G C T G A A C T G A T C G A G T C C G A T A C T G A G T C A G T C C G T A A C G T A C T G A G T C
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G C A T C A T G G A T C A G T C G T C A C T G A A C G T A C G T

NFIC::TLX1/MA0119.1/Jaspar

Match Rank:10
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-KYGKAKSCTGCCATGC
TTGGCATGGTGCCA---
 A C G T C A G T A G C T C T A G A C T G C T G A A C T G A T C G A G T C C G A T A C T G A G T C A G T C C G T A A C G T A C T G A G T C
G A C T A C G T A C T G A C T G A G T C C G T A G A C T A T C G A T C G C A G T A C T G A G T C A G T C C G T A A C G T A C G T A C G T