Information for 8-CTTAACACGT (Motif 13)

A G T C A C G T A C G T C G T A C G T A A T G C C G T A A G T C A C T G A G C T
Reverse Opposite:
C T G A A G T C C T A G A C G T A T C G A C G T A C G T T G C A C G T A T A C G
p-value:1e-9
log p-value:-2.210e+01
Information Content per bp:1.859
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.18%
Number of Background Sequences with motif22.7
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets49.4 +/- 17.9bp
Average Position of motif in Background36.2 +/- 23.1bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer

Match Rank:1
Score:0.74
Offset:0
Orientation:forward strand
Alignment:CTTAACACGT
ATTAACACCT
 A G T C A C G T A C G T C G T A C G T A A T G C C G T A A G T C A C T G A G C T
G C T A G A C T G A C T T G C A C G T A A G T C C G T A T A G C G A T C G A C T

CLOCK/MA0819.1/Jaspar

Match Rank:2
Score:0.73
Offset:3
Orientation:forward strand
Alignment:CTTAACACGT---
---AACACGTGTT
 A G T C A C G T A C G T C G T A C G T A A T G C C G T A A G T C A C T G A G C T A C G T A C G T A C G T
A C G T A C G T A C G T C T G A T C G A G T A C T C G A G A T C C T A G A C G T A C T G A G C T G A C T

Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer

Match Rank:3
Score:0.71
Offset:1
Orientation:reverse strand
Alignment:CTTAACACGT-
-TTMACACCTT
 A G T C A C G T A C G T C G T A C G T A A T G C C G T A A G T C A C T G A G C T A C G T
A C G T C A G T G A C T G T A C C T G A A T G C T C G A T A G C G T A C G A C T G A C T

TBX2/MA0688.1/Jaspar

Match Rank:4
Score:0.71
Offset:0
Orientation:reverse strand
Alignment:CTTAACACGT-
TTTCACACCTN
 A G T C A C G T A C G T C G T A C G T A A T G C C G T A A G T C A C T G A G C T A C G T
G C A T G C A T G A C T T G A C C T G A G A T C T C G A T A G C A G T C G A C T G C A T

TBX20/MA0689.1/Jaspar

Match Rank:5
Score:0.69
Offset:0
Orientation:reverse strand
Alignment:CTTAACACGT-
CTTCACACCTA
 A G T C A C G T A C G T C G T A C G T A A T G C C G T A A G T C A C T G A G C T A C G T
A G T C G C A T G C A T G T A C G T C A T G A C G T C A G T A C A G T C G A C T G C T A

TBR1/MA0802.1/Jaspar

Match Rank:6
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:CTTAACACGT
TTTCACACCT
 A G T C A C G T A C G T C G T A C G T A A T G C C G T A A G T C A C T G A G C T
C G A T C G A T G A C T T G A C C T G A T A G C T C G A T A G C G A T C G A C T

Mlxip/MA0622.1/Jaspar

Match Rank:7
Score:0.68
Offset:4
Orientation:reverse strand
Alignment:CTTAACACGT--
----ACACGTGC
 A G T C A C G T A C G T C G T A C G T A A T G C C G T A A G T C A C T G A G C T A C G T A C G T
A C G T A C G T A C G T A C G T G T C A A G T C C G T A A G T C A C T G A C G T A C T G T A G C

MAX/MA0058.3/Jaspar

Match Rank:8
Score:0.68
Offset:3
Orientation:forward strand
Alignment:CTTAACACGT---
---ACCACGTGCT
 A G T C A C G T A C G T C G T A C G T A A T G C C G T A A G T C A C T G A G C T A C G T A C G T A C G T
A C G T A C G T A C G T T G C A T G A C G T A C C T G A A G T C T C A G G A C T A C T G A T G C G A C T

MNT/MA0825.1/Jaspar

Match Rank:9
Score:0.67
Offset:3
Orientation:forward strand
Alignment:CTTAACACGT---
---ACCACGTGCC
 A G T C A C G T A C G T C G T A C G T A A T G C C G T A A G T C A C T G A G C T A C G T A C G T A C G T
A C G T A C G T A C G T C T G A T A G C G T A C C G T A A G T C C T A G A C G T A C T G T G A C G A T C

Npas2/MA0626.1/Jaspar

Match Rank:10
Score:0.67
Offset:3
Orientation:reverse strand
Alignment:CTTAACACGT---
---NACACGTGCN
 A G T C A C G T A C G T C G T A C G T A A T G C C G T A A G T C A C T G A G C T A C G T A C G T A C G T
A C G T A C G T A C G T A C T G T G C A A G T C C G T A A G T C A C T G A C G T A C T G A T G C G A T C