Information for 5-GCTTGCCAAA (Motif 9)

A C T G G T A C C G A T C G A T C T A G A T G C A G T C C G T A C G T A C G T A
Reverse Opposite:
C G A T A C G T A C G T C T A G T A C G G A T C G C T A G C T A C A T G T G A C
p-value:1e-11
log p-value:-2.543e+01
Information Content per bp:1.692
Number of Target Sequences with motif52.0
Percentage of Target Sequences with motif6.49%
Number of Background Sequences with motif1024.5
Percentage of Background Sequences with motif2.18%
Average Position of motif in Targets48.8 +/- 26.3bp
Average Position of motif in Background48.8 +/- 30.1bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIA/MA0670.1/Jaspar

Match Rank:1
Score:0.80
Offset:1
Orientation:forward strand
Alignment:GCTTGCCAAA-
-GGTGCCAAGT
 A C T G G T A C C G A T C G A T C T A G A T G C A G T C C G T A C G T A C G T A A C G T
A C G T T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T

NFIC/MA0161.1/Jaspar

Match Rank:2
Score:0.77
Offset:3
Orientation:reverse strand
Alignment:GCTTGCCAAA
---TGCCAA-
 A C T G G T A C C G A T C G A T C T A G A T G C A G T C C G T A C G T A C G T A
A C G T A C G T A C G T G C A T C A T G G A T C A G T C G T C A C T G A A C G T

NFIX/MA0671.1/Jaspar

Match Rank:3
Score:0.77
Offset:1
Orientation:forward strand
Alignment:GCTTGCCAAA
-CGTGCCAAG
 A C T G G T A C C G A T C G A T C T A G A T G C A G T C C G T A C G T A C G T A
A C G T T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:4
Score:0.72
Offset:2
Orientation:forward strand
Alignment:GCTTGCCAAA
--TTGCCAAG
 A C T G G T A C C G A T C G A T C T A G A T G C A G T C C G T A C G T A C G T A
A C G T A C G T A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G

PB0145.1_Mafb_2/Jaspar

Match Rank:5
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-GCTTGCCAAA----
CAATTGCAAAAATAT
 A C G T A C T G G T A C C G A T C G A T C T A G A T G C A G T C C G T A C G T A C G T A A C G T A C G T A C G T A C G T
G T A C T C G A C G T A A C G T A C G T A C T G G A T C C T G A C G T A G C T A C G T A C G T A G C A T C T G A G C A T

NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer

Match Rank:6
Score:0.66
Offset:3
Orientation:reverse strand
Alignment:GCTTGCCAAA---------
---TGCCAAAATAAACANN
 A C T G G T A C C G A T C G A T C T A G A T G C A G T C C G T A C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C G A T A C T G T A G C G T A C C G T A C T G A C T G A C T G A G A C T G T C A G T C A C T G A A G T C C G T A C T G A G C T A

Hic1/MA0739.1/Jaspar

Match Rank:7
Score:0.63
Offset:2
Orientation:forward strand
Alignment:GCTTGCCAAA-
--ATGCCAACC
 A C T G G T A C C G A T C G A T C T A G A T G C A G T C C G T A C G T A C G T A A C G T
A C G T A C G T T C G A A G C T T C A G T A G C G T A C G T C A T C G A A T G C A G T C

CEBPA/MA0102.3/Jaspar

Match Rank:8
Score:0.63
Offset:1
Orientation:forward strand
Alignment:GCTTGCCAAA--
-ATTGCACAATA
 A C T G G T A C C G A T C G A T C T A G A T G C A G T C C G T A C G T A C G T A A C G T A C G T
A C G T T C G A A C G T A C G T C A T G A G T C T G C A G A T C G T C A C G T A A G C T G T C A

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:9
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:GCTTGCCAAA--
--ATGCCAGACN
 A C T G G T A C C G A T C G A T C T A G A T G C A G T C C G T A C G T A C G T A A C G T A C G T
A C G T A C G T C G T A G C A T C A T G T A G C A G T C C G T A C T A G C G T A G A T C T A G C

CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer

Match Rank:10
Score:0.60
Offset:1
Orientation:forward strand
Alignment:GCTTGCCAAA-
-ATTGCGCAAC
 A C T G G T A C C G A T C G A T C T A G A T G C A G T C C G T A C G T A C G T A A C G T
A C G T T G C A A G C T A C G T C T A G G A T C C T A G G A T C G T C A C T G A A G T C