Information for 6-GCTTCAAAAC (Motif 13)

C A T G A T G C A C G T A C G T A G T C G T C A C T G A C G T A C G T A A G T C
Reverse Opposite:
A C T G A C G T A C G T A G C T A C G T A C T G G T C A C G T A T A C G G T A C
p-value:1e-10
log p-value:-2.427e+01
Information Content per bp:1.859
Number of Target Sequences with motif15.0
Percentage of Target Sequences with motif1.87%
Number of Background Sequences with motif82.6
Percentage of Background Sequences with motif0.18%
Average Position of motif in Targets45.3 +/- 31.8bp
Average Position of motif in Background52.3 +/- 31.9bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CHR(?)/Hela-CellCycle-Expression/Homer

Match Rank:1
Score:0.73
Offset:-2
Orientation:forward strand
Alignment:--GCTTCAAAAC
CGGTTTCAAA--
 A C G T A C G T C A T G A T G C A C G T A C G T A G T C G T C A C T G A C G T A C G T A A G T C
T A G C T C A G C A T G G C A T A G C T C G A T A T G C C G T A C G T A G T C A A C G T A C G T

LIN54/MA0619.1/Jaspar

Match Rank:2
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:GCTTCAAAAC
NATTCAAAT-
 C A T G A T G C A C G T A C G T A G T C G T C A C T G A C G T A C G T A A G T C
C T G A C T G A A C G T A C G T A G T C C T G A C G T A C G T A G C A T A C G T

PB0121.1_Foxj3_2/Jaspar

Match Rank:3
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-GCTTCAAAAC------
AACACCAAAACAAAGGA
 A C G T C A T G A T G C A C G T A C G T A G T C G T C A C T G A C G T A C G T A A G T C A C G T A C G T A C G T A C G T A C G T A C G T
G T C A C G T A A G T C C T G A G A T C G A T C T G C A G C T A G T C A C G T A A G T C C G T A C G T A G C T A C A T G T A C G C G T A

Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer

Match Rank:4
Score:0.64
Offset:0
Orientation:forward strand
Alignment:GCTTCAAAAC
ACATCAAAGG
 C A T G A T G C A C G T A C G T A G T C G T C A C T G A C G T A C G T A A G T C
C T G A A T G C G C T A C G A T A T G C C G T A C G T A C G T A C T A G T A C G

POL008.1_DCE_S_I/Jaspar

Match Rank:5
Score:0.62
Offset:0
Orientation:forward strand
Alignment:GCTTCAAAAC
GCTTCC----
 C A T G A T G C A C G T A C G T A G T C G T C A C T G A C G T A C G T A A G T C
A C T G A T G C A G C T A C G T A T G C A T G C A C G T A C G T A C G T A C G T

PB0034.1_Irf4_1/Jaspar

Match Rank:6
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-GCTTCAAAAC----
CGTATCGAAACCAAA
 A C G T C A T G A T G C A C G T A C G T A G T C G T C A C T G A C G T A C G T A A G T C A C G T A C G T A C G T A C G T
T G A C C T A G C G A T C G T A G A C T A G T C C T A G T C G A C G T A C G T A T A G C G A T C C T G A G T C A C G T A

PB0141.1_Isgf3g_2/Jaspar

Match Rank:7
Score:0.60
Offset:3
Orientation:forward strand
Alignment:GCTTCAAAAC-------
---GCAAAACATTACTA
 C A T G A T G C A C G T A C G T A G T C G T C A C T G A C G T A C G T A A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C T G T A G C C G T A C G T A C G T A C T G A T A G C C G T A A C G T C A G T C G T A G T A C G A C T C T G A

PB0123.1_Foxl1_2/Jaspar

Match Rank:8
Score:0.59
Offset:0
Orientation:forward strand
Alignment:GCTTCAAAAC------
ATATCAAAACAAAACA
 C A T G A T G C A C G T A C G T A G T C G T C A C T G A C G T A C G T A A G T C A C G T A C G T A C G T A C G T A C G T A C G T
G C T A C G A T C G T A C G A T G A T C G C T A G C T A G T C A C G T A A G T C C G T A C G T A G T C A C G T A G T A C G T C A

CEBPA/MA0102.3/Jaspar

Match Rank:9
Score:0.59
Offset:0
Orientation:forward strand
Alignment:GCTTCAAAAC-
ATTGCACAATA
 C A T G A T G C A C G T A C G T A G T C G T C A C T G A C G T A C G T A A G T C A C G T
T C G A A C G T A C G T C A T G A G T C T G C A G A T C G T C A C G T A A G C T G T C A

PB0145.1_Mafb_2/Jaspar

Match Rank:10
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--GCTTCAAAAC---
CAATTGCAAAAATAT
 A C G T A C G T C A T G A T G C A C G T A C G T A G T C G T C A C T G A C G T A C G T A A G T C A C G T A C G T A C G T
G T A C T C G A C G T A A C G T A C G T A C T G G A T C C T G A C G T A G C T A C G T A C G T A G C A T C T G A G C A T