Information for 10-GCAAATATTTGTT (Motif 12)

C T A G A G T C G T C A C G T A G T C A G A C T C G T A A C G T A C G T C G A T A C T G A G C T A G C T
Reverse Opposite:
T C G A C T G A A G T C C G T A C G T A C G T A C G A T C G T A A C G T A C G T C A G T T C A G A G T C
p-value:1e-10
log p-value:-2.517e+01
Information Content per bp:1.844
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.62%
Number of Background Sequences with motif2.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets50.4 +/- 28.6bp
Average Position of motif in Background94.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Arid5a/MA0602.1/Jaspar

Match Rank:1
Score:0.70
Offset:-3
Orientation:reverse strand
Alignment:---GCAAATATTTGTT
NNTNNCAATATTAG--
 A C G T A C G T A C G T C T A G A G T C G T C A C G T A G T C A G A C T C G T A A C G T A C G T C G A T A C T G A G C T A G C T
C G A T G C A T G A C T G C T A A C T G G A T C C T G A C G T A C G A T G C T A G C A T G A C T C T G A A T C G A C G T A C G T

PB0002.1_Arid5a_1/Jaspar

Match Rank:2
Score:0.70
Offset:-3
Orientation:reverse strand
Alignment:---GCAAATATTTGTT
NNTNNCAATATTAG--
 A C G T A C G T A C G T C T A G A G T C G T C A C G T A G T C A G A C T C G T A A C G T A C G T C G A T A C T G A G C T A G C T
C G A T G C A T G A C T G C T A A C T G G A T C C T G A C G T A C G A T G C T A G C A T G A C T C T G A A T C G A C G T A C G T

Foxd3/MA0041.1/Jaspar

Match Rank:3
Score:0.68
Offset:2
Orientation:forward strand
Alignment:GCAAATATTTGTT-
--GAATGTTTGTTT
 C T A G A G T C G T C A C G T A G T C A G A C T C G T A A C G T A C G T C G A T A C T G A G C T A G C T A C G T
A C G T A C G T C T A G G C T A G C T A G A C T C T A G A C G T C G A T C A G T C T A G G A C T A C G T A G C T

PB0172.1_Sox1_2/Jaspar

Match Rank:4
Score:0.65
Offset:2
Orientation:forward strand
Alignment:GCAAATATTTGTT----
--CTATAATTGTTAGCG
 C T A G A G T C G T C A C G T A G T C A G A C T C G T A A C G T A C G T C G A T A C T G A G C T A G C T A C G T A C G T A C G T A C G T
A C G T A C G T G T A C A G C T C T G A G A C T G C T A C T G A G A C T A G C T T A C G A C G T A C G T T G C A A C G T A G T C T A C G

PB0063.1_Sox13_1/Jaspar

Match Rank:5
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:GCAAATATTTGTT-----
--AANTTATTGTTCTNNA
 C T A G A G T C G T C A C G T A G T C A G A C T C G T A A C G T A C G T C G A T A C T G A G C T A G C T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C G T A C G T A G C A T G C A T G C A T C G T A A G C T C G A T C T A G C G A T G A C T G T A C A G C T G C A T C T G A G C T A

FOXB1/MA0845.1/Jaspar

Match Rank:6
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---GCAAATATTTGTT
TATGTAAATAT-----
 A C G T A C G T A C G T C T A G A G T C G T C A C G T A G T C A G A C T C G T A A C G T A C G T C G A T A C T G A G C T A G C T
G C A T C T G A C G A T C T A G G A C T T G C A G C T A C G T A A G C T C T G A G C A T A C G T A C G T A C G T A C G T A C G T

FOXC1/MA0032.2/Jaspar

Match Rank:7
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---GCAAATATTTGTT
TATGTAAATAT-----
 A C G T A C G T A C G T C T A G A G T C G T C A C G T A G T C A G A C T C G T A A C G T A C G T C G A T A C T G A G C T A G C T
G C A T C T G A C G A T T C A G G C A T G T C A G T C A C T G A A G C T C T G A G C A T A C G T A C G T A C G T A C G T A C G T

MF0011.1_HMG_class/Jaspar

Match Rank:8
Score:0.59
Offset:7
Orientation:forward strand
Alignment:GCAAATATTTGTT
-------ATTGTT
 C T A G A G T C G T C A C G T A G T C A G A C T C G T A A C G T A C G T C G A T A C T G A G C T A G C T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T G C T A A C G T G A C T C T A G G C A T A G C T

PB0062.1_Sox12_1/Jaspar

Match Rank:9
Score:0.58
Offset:5
Orientation:forward strand
Alignment:GCAAATATTTGTT------
-----TAATTGTTCTAAAC
 C T A G A G T C G T C A C G T A G T C A G A C T C G T A A C G T A C G T C G A T A C T G A G C T A G C T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G A C T G C T A C G T A A C G T C G A T C T A G C G A T G A C T T G A C G C A T G T C A C G T A G C T A G T A C

PB0071.1_Sox4_1/Jaspar

Match Rank:10
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:GCAAATATTTGTT-----
-TNNTCCTTTGTTCTNNT
 C T A G A G T C G T C A C G T A G T C A G A C T C G T A A C G T A C G T C G A T A C T G A G C T A G C T A C G T A C G T A C G T A C G T A C G T
A C G T C G A T C G T A T C A G A G C T A G T C A G T C C G A T A C G T C G A T T A C G C G A T A G C T G A T C G C A T G A C T T G A C C A G T