Information for 5-CAGCATTAAC (Motif 11)

A T G C G T C A C T A G T A G C C G T A A C G T G C A T G T C A C G T A A T G C
Reverse Opposite:
A T C G A C G T A C G T C G T A G T C A A C G T A T C G A G T C A C G T A T C G
p-value:1e-9
log p-value:-2.288e+01
Information Content per bp:1.839
Number of Target Sequences with motif15.0
Percentage of Target Sequences with motif1.89%
Number of Background Sequences with motif94.8
Percentage of Background Sequences with motif0.20%
Average Position of motif in Targets38.9 +/- 27.8bp
Average Position of motif in Background54.8 +/- 29.2bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0176.1_Sox5_2/Jaspar

Match Rank:1
Score:0.68
Offset:-3
Orientation:forward strand
Alignment:---CAGCATTAAC--
TATCATAATTAAGGA
 A C G T A C G T A C G T A T G C G T C A C T A G T A G C C G T A A C G T G C A T G T C A C G T A A T G C A C G T A C G T
C G A T G C T A C G A T A G T C C T G A C A G T T G C A G C T A G C A T G A C T C G T A T G C A T A C G C A T G C G T A

OTX2/MA0712.1/Jaspar

Match Rank:2
Score:0.66
Offset:1
Orientation:reverse strand
Alignment:CAGCATTAAC
-NGGATTAA-
 A T G C G T C A C T A G T A G C C G T A A C G T G C A T G T C A C G T A A T G C
A C G T T G C A T C A G C T A G G T C A A C G T G C A T C G T A C T G A A C G T

Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer

Match Rank:3
Score:0.66
Offset:2
Orientation:reverse strand
Alignment:CAGCATTAAC
--YCATTAMC
 A T G C G T C A C T A G T A G C C G T A A C G T G C A T G T C A C G T A A T G C
A C G T A C G T A G C T T G A C C G T A A C G T A C G T C G T A G T C A T G A C

Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer

Match Rank:4
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:CAGCATTAAC
VRGGATTARN
 A T G C G T C A C T A G T A G C C G T A A C G T G C A T G T C A C G T A A T G C
T C G A C T A G C T A G C T A G G T C A A C G T C G A T C G T A C T G A T A G C

Pitx1/MA0682.1/Jaspar

Match Rank:5
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:CAGCATTAAC
-GGGATTAA-
 A T G C G T C A C T A G T A G C C G T A A C G T G C A T G T C A C G T A A T G C
A C G T C A T G C T A G C T A G G T C A C G A T A G C T C G T A C T G A A C G T

Arid3a/MA0151.1/Jaspar

Match Rank:6
Score:0.63
Offset:4
Orientation:forward strand
Alignment:CAGCATTAAC
----ATTAAA
 A T G C G T C A C T A G T A G C C G T A A C G T G C A T G T C A C G T A A T G C
A C G T A C G T A C G T A C G T C G T A A C G T G A C T C G T A C G T A C G T A

MYBL1/MA0776.1/Jaspar

Match Rank:7
Score:0.62
Offset:1
Orientation:forward strand
Alignment:CAGCATTAAC---
-ACCGTTAACGGT
 A T G C G T C A C T A G T A G C C G T A A C G T G C A T G T C A C G T A A T G C A C G T A C G T A C G T
A C G T C T G A T G A C T A G C T C A G G A C T G C A T C G T A T C G A G T A C A T C G C A T G G A C T

MAFK/MA0496.1/Jaspar

Match Rank:8
Score:0.62
Offset:-6
Orientation:forward strand
Alignment:------CAGCATTAAC
CTGAGTCAGCAATTT-
 A C G T A C G T A C G T A C G T A C G T A C G T A T G C G T C A C T A G T A G C C G T A A C G T G C A T G T C A C G T A A T G C
G T A C G C A T C T A G C G T A T A C G A G C T G T A C C G T A A C T G A T G C G C T A C G T A G C A T G C A T G C A T A C G T

GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer

Match Rank:9
Score:0.62
Offset:1
Orientation:forward strand
Alignment:CAGCATTAAC
-RGGATTAR-
 A T G C G T C A C T A G T A G C C G T A A C G T G C A T G T C A C G T A A T G C
A C G T T C A G C T A G C T A G T G C A C G A T C G A T C G T A C T A G A C G T

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:10
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:CAGCATTAAC
--GGATTAGC
 A T G C G T C A C T A G T A G C C G T A A C G T G C A T G T C A C G T A A T G C
A C G T A C G T T C A G T A C G T G C A C A G T G C A T C G T A C T A G T A G C