Information for 11-GACATTTTAT (Motif 18)

A C T G C G T A A G T C C G T A A C G T A C G T A C G T A C G T C G T A A C G T
Reverse Opposite:
C G T A A C G T C G T A C G T A C G T A C G T A A C G T A C T G A C G T A G T C
p-value:1e-5
log p-value:-1.291e+01
Information Content per bp:1.530
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.47%
Number of Background Sequences with motif5.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets60.0 +/- 10.2bp
Average Position of motif in Background50.1 +/- 30.0bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0075.1_Hoxd10/Jaspar

Match Rank:1
Score:0.71
Offset:-1
Orientation:reverse strand
Alignment:-GACATTTTAT------
NTNAATTTTATTGNATT
 A C G T A C T G C G T A A G T C C G T A A C G T A C G T A C G T A C G T C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C G T A G C A T G C T A G C T A C T G A A G C T C G A T C G A T C G A T C T G A G C A T C A G T C T A G A G T C T G C A G A C T A C G T

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:2
Score:0.71
Offset:3
Orientation:reverse strand
Alignment:GACATTTTAT---
---NTTTTATGAC
 A C T G C G T A A G T C C G T A A C G T A C G T A C G T A C G T C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C T G A C G A T A C G T A C G T A C G T C G T A A C G T C A T G C T G A A G T C

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:3
Score:0.70
Offset:4
Orientation:reverse strand
Alignment:GACATTTTAT----
----TTTTATTRGN
 A C T G C G T A A G T C C G T A A C G T A C G T A C G T A C G T C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C G A T A C G T A C G T C G A T C G T A G C A T C A G T C T G A A T C G G C T A

HOXD13/MA0909.1/Jaspar

Match Rank:4
Score:0.70
Offset:3
Orientation:reverse strand
Alignment:GACATTTTAT---
---NTTTTATTGG
 A C T G C G T A A G T C C G T A A C G T A C G T A C G T A C G T C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C A G T C A G T A C G T C G A T C G A T C T G A G C A T C A G T C T A G T A C G

PH0078.1_Hoxd13/Jaspar

Match Rank:5
Score:0.69
Offset:0
Orientation:reverse strand
Alignment:GACATTTTAT------
NNANTTTTATTGGNNN
 A C T G C G T A A G T C C G T A A C G T A C G T A C G T A C G T C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C G T A C A T G C T G A C T G A C A G T C G A T C G A T G C A T C T G A G A C T C G A T C T A G T C A G C G A T G C T A C A T G

CDX1/MA0878.1/Jaspar

Match Rank:6
Score:0.69
Offset:4
Orientation:reverse strand
Alignment:GACATTTTAT---
----TTTTATTGC
 A C T G C G T A A G T C C G T A A C G T A C G T A C G T A C G T C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C A G T C G A T G C A T C G A T C G T A A G C T C A G T C T A G A G T C

PH0013.1_Cdx2/Jaspar

Match Rank:7
Score:0.68
Offset:1
Orientation:reverse strand
Alignment:GACATTTTAT-------
-NAATTTTATTACCNNN
 A C T G C G T A A G T C C G T A A C G T A C G T A C G T A C G T C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T C T G A G T C A C T G A C G A T C G A T C G A T C G A T C G T A A G C T C A G T C T G A A G T C G A T C A C G T A G C T G C A T

PH0057.1_Hoxb13/Jaspar

Match Rank:8
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:GACATTTTAT------
NNAATTTTATTGGNTN
 A C T G C G T A A G T C C G T A A C G T A C G T A C G T A C G T C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A T G C C T A G C G T A C G T A A C G T C G A T C G A T G C A T C T G A G A C T C A G T C T A G T A C G C A T G G A C T A C G T

CDX2/MA0465.1/Jaspar

Match Rank:9
Score:0.68
Offset:4
Orientation:reverse strand
Alignment:GACATTTTAT-----
----TTTTATGGCTN
 A C T G C G T A A G T C C G T A A C G T A C G T A C G T A C G T C G T A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A G C T A C G T A C G T A C G T C G T A A C G T C A T G C T A G A G T C G A C T A G C T

HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer

Match Rank:10
Score:0.68
Offset:4
Orientation:forward strand
Alignment:GACATTTTAT----
----TTTTATKRGG
 A C T G C G T A A G T C C G T A A C G T A C G T A C G T A C G T C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C G A T A C G T A C G T A C G T C G T A A G C T C A G T C T A G A T C G A C T G