Information for 4-TGGTGGCAGGCAA (Motif 11)

A C G T A C T G A C T G A C G T A C T G A C T G A G T C C G T A A T C G A C T G A T G C C G T A C G T A
Reverse Opposite:
A C G T A C G T A T C G A G T C A T G C A C G T A C T G A G T C G T A C C G T A A G T C A G T C G T C A
p-value:1e-11
log p-value:-2.545e+01
Information Content per bp:1.913
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.65%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets50.2 +/- 13.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer

Match Rank:1
Score:0.68
Offset:3
Orientation:forward strand
Alignment:TGGTGGCAGGCAA
---TBGCACGCAA
 A C G T A C T G A C T G A C G T A C T G A C T G A G T C C G T A A T C G A C T G A T G C C G T A C G T A
A C G T A C G T A C G T G C A T A T C G C A T G G T A C G C T A A G T C T C A G T G A C G T C A T G C A

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:2
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:TGGTGGCAGGCAA
AGGTGNCAGACAG
 A C G T A C T G A C T G A C G T A C T G A C T G A G T C C G T A A T C G A C T G A T G C C G T A C G T A
C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.63
Offset:0
Orientation:forward strand
Alignment:TGGTGGCAGGCAA
AGGTGHCAGACA-
 A C G T A C T G A C T G A C G T A C T G A C T G A G T C C G T A A T C G A C T G A T G C C G T A C G T A
C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A A C G T

Hic1/MA0739.1/Jaspar

Match Rank:4
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:TGGTGGCAGGCAA
GGTTGGCAT----
 A C G T A C T G A C T G A C G T A C T G A C T G A G T C C G T A A T C G A C T G A T G C C G T A C G T A
T C A G T A C G A G C T C A G T C A T G A T C G A G T C T C G A A G C T A C G T A C G T A C G T A C G T

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:5
Score:0.59
Offset:6
Orientation:forward strand
Alignment:TGGTGGCAGGCAA----
------AAGGCAAGTGT
 A C G T A C T G A C T G A C G T A C T G A C T G A G T C C G T A A T C G A C T G A T G C C G T A C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T G C A C G T A C T A G A C T G A G T C T C G A C T G A T A C G A C G T C T A G A G C T

PB0029.1_Hic1_1/Jaspar

Match Rank:6
Score:0.57
Offset:-4
Orientation:reverse strand
Alignment:----TGGTGGCAGGCAA
NGTAGGTTGGCATNNN-
 A C G T A C G T A C G T A C G T A C G T A C T G A C T G A C G T A C T G A C T G A G T C C G T A A T C G A C T G A T G C C G T A C G T A
C T A G C T A G A G C T C G T A T C A G T C A G A C G T C A G T A C T G A T C G A G T C C G T A G A C T T G C A T C A G G C A T A C G T

Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer

Match Rank:7
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--TGGTGGCAGGCAA
GGTGYTGACAGS---
 A C G T A C G T A C G T A C T G A C T G A C G T A C T G A C T G A G T C C G T A A T C G A C T G A T G C C G T A C G T A
T C A G A T C G G A C T A C T G G A C T C A G T C T A G C G T A G T A C C G T A C T A G A T C G A C G T A C G T A C G T

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:8
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:TGGTGGCAGGCAA
-VBTGWCAGCB--
 A C G T A C T G A C T G A C G T A C T G A C T G A G T C C G T A A T C G A C T G A T G C C G T A C G T A
A C G T T C A G A T G C A C G T A C T G C G T A A G T C C G T A A T C G A T G C A G T C A C G T A C G T

PH0164.1_Six4/Jaspar

Match Rank:9
Score:0.56
Offset:-4
Orientation:reverse strand
Alignment:----TGGTGGCAGGCAA
TNNNNGGTGTCATNTNT
 A C G T A C G T A C G T A C G T A C G T A C T G A C T G A C G T A C T G A C T G A G T C C G T A A T C G A C T G A T G C C G T A C G T A
A G C T T C A G T C G A C A G T C T G A T C A G A C T G A C G T C T A G A C G T G T A C C T G A C G A T C A G T G A C T G T C A C A G T

EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer

Match Rank:10
Score:0.56
Offset:4
Orientation:reverse strand
Alignment:TGGTGGCAGGCAA-
----NACAGGAAAT
 A C G T A C T G A C T G A C G T A C T G A C T G A G T C C G T A A T C G A C T G A T G C C G T A C G T A A C G T
A C G T A C G T A C G T A C G T T A G C C T G A T A G C G T C A A C T G A C T G C G T A C G T A C T G A A G C T