Information for 8-CACCAGGCAGGCG (Motif 16)

A G T C C T G A A T G C A G T C G T C A A C T G C T A G A G T C C G T A A C T G A C T G A G T C A C T G
Reverse Opposite:
A G T C C T A G A G T C A G T C A C G T A C T G A G T C A G T C A C G T A C T G A T C G A G C T A C T G
p-value:1e-6
log p-value:-1.432e+01
Information Content per bp:1.903
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.53%
Number of Background Sequences with motif4.2
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets61.0 +/- 14.8bp
Average Position of motif in Background46.7 +/- 24.3bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.25
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer

Match Rank:1
Score:0.62
Offset:4
Orientation:reverse strand
Alignment:CACCAGGCAGGCG---
----SDGCAGGTGCNS
 A G T C C T G A A T G C A G T C G T C A A C T G C T A G A G T C C G T A A C T G A C T G A G T C A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A T C G C T A G C T A G A G T C C G T A A C T G A C T G A C G T A C T G A T G C G A T C A T G C

E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:2
Score:0.62
Offset:5
Orientation:reverse strand
Alignment:CACCAGGCAGGCG--
-----NNCAGGTGNN
 A G T C C T G A A T G C A G T C G T C A A C T G C T A G A G T C C G T A A C T G A C T G A G T C A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C A G T T A C G A G T C C G T A A C T G A C T G A C G T A C T G A C G T T A C G

ID4/MA0824.1/Jaspar

Match Rank:3
Score:0.61
Offset:5
Orientation:reverse strand
Alignment:CACCAGGCAGGCG--
-----GACAGGTGTN
 A G T C C T G A A T G C A G T C G T C A A C T G C T A G A G T C C G T A A C T G A C T G A G T C A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C T A G T C G A A G T C C G T A A T C G A T C G A G C T A C T G A G C T G T C A

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:4
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:CACCAGGCAGGCG----
--SCAGYCADGCATGAC
 A G T C C T G A A T G C A G T C G T C A A C T G C T A G A G T C C G T A A C T G A C T G A G T C A C T G A C G T A C G T A C G T A C G T
A C G T A C G T A T C G G T A C C G T A A T C G A G C T A T G C C G T A C T A G A T C G A G T C T C G A C A G T T C A G T C G A T G A C

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:5
Score:0.61
Offset:3
Orientation:forward strand
Alignment:CACCAGGCAGGCG-
---AAGGCAAGTGT
 A G T C C T G A A T G C A G T C G T C A A C T G C T A G A G T C C G T A A C T G A C T G A G T C A C T G A C G T
A C G T A C G T A C G T T G C A C G T A C T A G A C T G A G T C T C G A C T G A T A C G A C G T C T A G A G C T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:6
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:CACCAGGCAGGCG
--CCAGACAG---
 A G T C C T G A A T G C A G T C G T C A A C T G C T A G A G T C C G T A A C T G A C T G A G T C A C T G
A C G T A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T A C G T A C G T

SNAI2/MA0745.1/Jaspar

Match Rank:7
Score:0.60
Offset:5
Orientation:forward strand
Alignment:CACCAGGCAGGCG-
-----AACAGGTGT
 A G T C C T G A A T G C A G T C G T C A A C T G C T A G A G T C C G T A A C T G A C T G A G T C A C T G A C G T
A C G T A C G T A C G T A C G T A C G T C T G A C T G A G T A C G C T A C T A G C T A G G A C T C A T G A G C T

TCF4/MA0830.1/Jaspar

Match Rank:8
Score:0.59
Offset:5
Orientation:reverse strand
Alignment:CACCAGGCAGGCG--
-----NNCAGGTGCG
 A G T C C T G A A T G C A G T C G T C A A C T G C T A G A G T C C G T A A C T G A C T G A G T C A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G C T A T A C G G A T C C G T A A T C G T A C G A C G T C T A G A G T C C T A G

TCF3/MA0522.2/Jaspar

Match Rank:9
Score:0.58
Offset:5
Orientation:reverse strand
Alignment:CACCAGGCAGGCG--
-----NNCAGGTGTN
 A G T C C T G A A T G C A G T C G T C A A C T G C T A G A G T C C G T A A C T G A C T G A G T C A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G T C A T C A G A G T C C G T A A T C G T A C G C G A T A C T G A G C T C A G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:10
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:CACCAGGCAGGCG
--CCAGACRSVB-
 A G T C C T G A A T G C A G T C G T C A A C T G C T A G A G T C C G T A A C T G A C T G A G T C A C T G
A C G T A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C A C G T