Information for 1-CMCCAGGGGGCGC (Motif 1)

A G T C G T C A A T G C A T G C G T C A A C T G C T A G A C T G A C T G A C T G A G T C C T A G G T A C
Reverse Opposite:
A C T G A G T C A C T G A G T C T G A C G T A C A G T C A G T C A C G T A T C G A T C G C A G T A C T G
p-value:1e-19
log p-value:-4.483e+01
Information Content per bp:1.807
Number of Target Sequences with motif29.0
Percentage of Target Sequences with motif3.85%
Number of Background Sequences with motif177.4
Percentage of Background Sequences with motif0.37%
Average Position of motif in Targets47.6 +/- 25.0bp
Average Position of motif in Background45.8 +/- 27.5bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:1
Score:0.87
Offset:-2
Orientation:reverse strand
Alignment:--CMCCAGGGGGCGC-----
GCCASCAGGGGGCGCYVNNG
 A C G T A C G T A G T C G T C A A T G C A T G C G T C A A C T G C T A G A C T G A C T G A C T G A G T C C T A G G T A C A C G T A C G T A C G T A C G T A C G T
C T A G T A G C A G T C C G T A T A G C G A T C C G T A A C T G C T A G C A T G A C T G A C T G G T A C C T A G A T G C G A T C T C A G A C T G T C A G A T C G

CTCF/MA0139.1/Jaspar

Match Rank:2
Score:0.82
Offset:-4
Orientation:forward strand
Alignment:----CMCCAGGGGGCGC--
TGGCCACCAGGGGGCGCTA
 A C G T A C G T A C G T A C G T A G T C G T C A A T G C A T G C G T C A A C T G C T A G A C T G A C T G A C T G A G T C C T A G G T A C A C G T A C G T
G A C T C A T G C T A G G T A C G T A C C G T A T A G C G A T C C T G A C T A G C T A G C A T G C T A G C A T G G T A C C T A G T A G C G A C T T C G A

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:3
Score:0.77
Offset:-4
Orientation:reverse strand
Alignment:----CMCCAGGGGGCGC---
TGGCCACCAGGTGGCACTNT
 A C G T A C G T A C G T A C G T A G T C G T C A A T G C A T G C G T C A A C T G C T A G A C T G A C T G A C T G A G T C C T A G G T A C A C G T A C G T A C G T
G A C T C A T G C T A G G T A C G A T C C G T A T A G C G A T C C T G A A C T G T C A G C A G T C T A G C A T G G A T C C T G A T A G C G A C T T C G A A C G T

PB0076.1_Sp4_1/Jaspar

Match Rank:4
Score:0.70
Offset:0
Orientation:reverse strand
Alignment:CMCCAGGGGGCGC----
NNNAAGGGGGCGGGNNN
 A G T C G T C A A T G C A T G C G T C A A C T G C T A G A C T G A C T G A C T G A G T C C T A G G T A C A C G T A C G T A C G T A C G T
T A C G T C G A A T C G C T G A C T G A C T A G C A T G C T A G A T C G A C T G G A T C A C T G A C T G C A T G C T G A G A T C T G A C

PB0101.1_Zic1_1/Jaspar

Match Rank:5
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--CMCCAGGGGGCGC
CACCCCCGGGGGGG-
 A C G T A C G T A G T C G T C A A T G C A T G C G T C A A C T G C T A G A C T G A C T G A C T G A G T C C T A G G T A C
A T G C G T C A G A T C G T A C G T A C A T G C T A G C A T C G T A C G A C T G A C T G C A T G A C T G A T C G A C G T

PB0103.1_Zic3_1/Jaspar

Match Rank:6
Score:0.65
Offset:-3
Orientation:reverse strand
Alignment:---CMCCAGGGGGCGC
NCCCCCCCGGGGGGN-
 A C G T A C G T A C G T A G T C G T C A A T G C A T G C G T C A A C T G C T A G A C T G A C T G A C T G A G T C C T A G G T A C
T C G A T A G C G T A C G T A C G T A C G T A C A T G C T G A C A T C G T A C G A C T G C A T G C A T G C A T G T A C G A C G T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:7
Score:0.65
Offset:-3
Orientation:reverse strand
Alignment:---CMCCAGGGGGCGC
DCHCAGCAGGRGGCC-
 A C G T A C G T A C G T A G T C G T C A A T G C A T G C G T C A A C T G C T A G A C T G A C T G A C T G A G T C C T A G G T A C
C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C A C G T

ZIC4/MA0751.1/Jaspar

Match Rank:8
Score:0.65
Offset:-3
Orientation:reverse strand
Alignment:---CMCCAGGGGGCGC
NCNCAGCGGGGGGTC-
 A C G T A C G T A C G T A G T C G T C A A T G C A T G C G T C A A C T G C T A G A C T G A C T G A C T G A G T C C T A G G T A C
C A T G T G A C C T G A G A T C G T C A T C A G G A T C C T A G C A T G C A T G C A T G C A T G C A T G A G C T T G A C A C G T

PB0102.1_Zic2_1/Jaspar

Match Rank:9
Score:0.64
Offset:-3
Orientation:reverse strand
Alignment:---CMCCAGGGGGCGC
ACCCCCCCGGGGGGN-
 A C G T A C G T A C G T A G T C G T C A A T G C A T G C G T C A A C T G C T A G A C T G A C T G A C T G A G T C C T A G G T A C
T G C A T A G C G T A C G T A C G T A C G T A C A T G C T G A C A T C G A T C G A C T G C A T G C A T G C A T G T A C G A C G T

PB0052.1_Plagl1_1/Jaspar

Match Rank:10
Score:0.63
Offset:3
Orientation:forward strand
Alignment:CMCCAGGGGGCGC------
---TTGGGGGCGCCCCTAG
 A G T C G T C A A T G C A T G C G T C A A C T G C T A G A C T G A C T G A C T G A G T C C T A G G T A C A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G A C T C T A G C T A G C A T G C T A G A C T G A T G C A T C G T G A C G A T C G T A C G A T C A C G T T C G A T A C G