Information for 2-CYWKKGCMCWKSAGGG (Motif 6)

A G T C G A C T C G A T A C G T A C G T A C T G A G T C G T C A A G T C C G A T A C T G A T C G C G T A A C T G A C T G A C T G
Reverse Opposite:
A G T C A G T C A G T C A C G T A T G C G T A C C G T A A C T G A C G T A C T G A G T C G T C A T G C A C G T A C T G A A C T G
p-value:1e-11
log p-value:-2.663e+01
Information Content per bp:1.806
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.73%
Number of Background Sequences with motif2.5
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets47.3 +/- 29.4bp
Average Position of motif in Background46.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:1
Score:0.67
Offset:6
Orientation:forward strand
Alignment:CYWKKGCMCWKSAGGG--
------CACAGCAGGGGG
 A G T C G A C T C G A T A C G T A C G T A C T G A G T C G T C A A G T C C G A T A C T G A T C G C G T A A C T G A C T G A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:2
Score:0.66
Offset:5
Orientation:reverse strand
Alignment:CYWKKGCMCWKSAGGG----
-----DCHCAGCAGGRGGCC
 A G T C G A C T C G A T A C G T A C G T A C T G A G T C G T C A A G T C C G A T A C T G A T C G C G T A A C T G A C T G A C T G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C

PB0207.1_Zic3_2/Jaspar

Match Rank:3
Score:0.60
Offset:3
Orientation:forward strand
Alignment:CYWKKGCMCWKSAGGG--
---GAGCACAGCAGGACA
 A G T C G A C T C G A T A C G T A C G T A C T G A G T C G T C A A G T C C G A T A C T G A T C G C G T A A C T G A C T G A C T G A C G T A C G T
A C G T A C G T A C G T C A T G C G T A C T A G T G A C C T G A A G T C C G T A C T A G A G T C C T G A A C T G A C T G G T C A T A G C C G T A

PB0206.1_Zic2_2/Jaspar

Match Rank:4
Score:0.59
Offset:3
Orientation:forward strand
Alignment:CYWKKGCMCWKSAGGG--
---CCACACAGCAGGAGA
 A G T C G A C T C G A T A C G T A C G T A C T G A G T C G T C A A G T C C G A T A C T G A T C G C G T A A C T G A C T G A C T G A C G T A C G T
A C G T A C G T A C G T G A T C G A T C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

PB0205.1_Zic1_2/Jaspar

Match Rank:5
Score:0.59
Offset:3
Orientation:forward strand
Alignment:CYWKKGCMCWKSAGGG--
---CCACACAGCAGGAGA
 A G T C G A C T C G A T A C G T A C G T A C T G A G T C G T C A A G T C C G A T A C T G A T C G C G T A A C T G A C T G A C T G A C G T A C G T
A C G T A C G T A C G T A G T C G T A C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:6
Score:0.58
Offset:5
Orientation:reverse strand
Alignment:CYWKKGCMCWKSAGGG
-----DCTCAGCAGG-
 A G T C G A C T C G A T A C G T A C G T A C T G A G T C G T C A A G T C C G A T A C T G A T C G C G T A A C T G A C T G A C T G
A C G T A C G T A C G T A C G T A C G T C A G T G T A C G C A T A G T C G C T A A C T G A G T C C T G A A C T G A C T G A C G T

TFAP2A(var.3)/MA0872.1/Jaspar

Match Rank:7
Score:0.57
Offset:4
Orientation:forward strand
Alignment:CYWKKGCMCWKSAGGG-
----TGCCCTGAGGGCA
 A G T C G A C T C G A T A C G T A C G T A C T G A G T C G T C A A G T C C G A T A C T G A T C G C G T A A C T G A C T G A C T G A C G T
A C G T A C G T A C G T A C G T G C A T A T C G A G T C A G T C A G T C A G C T A T C G T C G A T C A G A C T G A C T G A T G C C G T A

TFAP2B(var.3)/MA0813.1/Jaspar

Match Rank:8
Score:0.56
Offset:4
Orientation:forward strand
Alignment:CYWKKGCMCWKSAGGG-
----TGCCCTGAGGGCA
 A G T C G A C T C G A T A C G T A C G T A C T G A G T C G T C A A G T C C G A T A C T G A T C G C G T A A C T G A C T G A C T G A C G T
A C G T A C G T A C G T A C G T G C A T A T C G A G T C A G T C A G T C A G C T A C T G T C G A T C A G A C T G A C T G A T G C C G T A

ZIC3/MA0697.1/Jaspar

Match Rank:9
Score:0.56
Offset:5
Orientation:reverse strand
Alignment:CYWKKGCMCWKSAGGG----
-----NCGCAGCGGGGGGTC
 A G T C G A C T C G A T A C G T A C G T A C T G A G T C G T C A A G T C C G A T A C T G A T C G C G T A A C T G A C T G A C T G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C A T G G T A C C T A G G A T C T G C A T C A G A G T C C T A G A C T G A C T G C A T G C A T G C A T G A G C T T G A C

ZIC1/MA0696.1/Jaspar

Match Rank:10
Score:0.56
Offset:6
Orientation:reverse strand
Alignment:CYWKKGCMCWKSAGGG----
------CACAGCGGGGGGTC
 A G T C G A C T C G A T A C G T A C G T A C T G A G T C G T C A A G T C C G A T A C T G A T C G C G T A A C T G A C T G A C T G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T G A C C T G A A G T C T G C A T C A G A G T C C T A G C A T G T C A G C A T G C A T G C A T G A G C T T G A C