Information for 2-AGCACTYAAGKTG (Motif 2)

C G T A A T C G G T A C G C T A A T G C A C G T A G T C G T C A T C G A A T C G A C T G C A G T A C T G
Reverse Opposite:
G T A C G T C A T G A C A T G C A G C T A C G T T C A G C G T A T A C G C G A T A C T G A T G C C G A T
p-value:1e-13
log p-value:-3.192e+01
Information Content per bp:1.699
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.85%
Number of Background Sequences with motif2.4
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets54.3 +/- 28.8bp
Average Position of motif in Background26.8 +/- 16.6bp
Strand Bias (log2 ratio + to - strand density)-1.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:1
Score:0.78
Offset:-1
Orientation:forward strand
Alignment:-AGCACTYAAGKTG
AAGCACTTAA----
 A C G T C G T A A T C G G T A C G C T A A T G C A C G T A G T C G T C A T C G A A T C G A C T G C A G T A C T G
T C G A T C G A T A C G G A T C G T C A G T A C C G A T A G C T G T C A T G C A A C G T A C G T A C G T A C G T

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:2
Score:0.74
Offset:-1
Orientation:forward strand
Alignment:-AGCACTYAAGKTG
AGCCACTCAAG---
 A C G T C G T A A T C G G T A C G C T A A T G C A C G T A G T C G T C A T C G A A T C G A C T G C A G T A C T G
C T G A C T A G T A G C A G T C G C T A A G T C A C G T A G T C G T C A C T G A T A C G A C G T A C G T A C G T

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:3
Score:0.73
Offset:-1
Orientation:forward strand
Alignment:-AGCACTYAAGKTG
AASCACTCAA----
 A C G T C G T A A T C G G T A C G C T A A T G C A C G T A G T C G T C A T C G A A T C G A C T G C A G T A C T G
C T G A C T G A T A G C G A T C G C T A G T A C A C G T G A T C T G C A C G T A A C G T A C G T A C G T A C G T

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:4
Score:0.72
Offset:0
Orientation:forward strand
Alignment:AGCACTYAAGKTG
RSCACTYRAG---
 C G T A A T C G G T A C G C T A A T G C A C G T A G T C G T C A T C G A A T C G A C T G C A G T A C T G
C T A G T A C G A G T C C G T A A G T C A C G T A G T C T C G A C G T A T A C G A C G T A C G T A C G T

ISL2/MA0914.1/Jaspar

Match Rank:5
Score:0.72
Offset:1
Orientation:forward strand
Alignment:AGCACTYAAGKTG
-GCACTTAA----
 C G T A A T C G G T A C G C T A A T G C A C G T A G T C G T C A T C G A A T C G A C T G C A G T A C T G
A C G T T A C G G A T C G C T A G T A C C G A T G A C T G C T A C T G A A C G T A C G T A C G T A C G T

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:6
Score:0.71
Offset:-1
Orientation:reverse strand
Alignment:-AGCACTYAAGKTG
MRSCACTYAA----
 A C G T C G T A A T C G G T A C G C T A A T G C A C G T A G T C G T C A T C G A A T C G A C T G C A G T A C T G
G T C A C T G A T A G C A G T C C G T A G T A C G C A T A G T C C T G A T C G A A C G T A C G T A C G T A C G T

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:7
Score:0.71
Offset:0
Orientation:reverse strand
Alignment:AGCACTYAAGKTG
NSCACTYVAV---
 C G T A A T C G G T A C G C T A A T G C A C G T A G T C G T C A T C G A A T C G A C T G C A G T A C T G
C T A G T A G C A G T C G C T A G A T C A C G T G A T C T C G A C T G A T A C G A C G T A C G T A C G T

NKX3-2/MA0122.2/Jaspar

Match Rank:8
Score:0.70
Offset:0
Orientation:forward strand
Alignment:AGCACTYAAGKTG
ACCACTTAA----
 C G T A A T C G G T A C G C T A A T G C A C G T A G T C G T C A T C G A A T C G A C T G C A G T A C T G
T C G A T A G C G A T C G C T A G T A C A G C T G A C T G C T A C T G A A C G T A C G T A C G T A C G T

Nkx3-1/MA0124.2/Jaspar

Match Rank:9
Score:0.70
Offset:0
Orientation:forward strand
Alignment:AGCACTYAAGKTG
ACCACTTAA----
 C G T A A T C G G T A C G C T A A T G C A C G T A G T C G T C A T C G A A T C G A C T G C A G T A C T G
T C G A T A G C A G T C G C T A G T A C A G C T A G C T G C T A C T G A A C G T A C G T A C G T A C G T

PH0004.1_Nkx3-2/Jaspar

Match Rank:10
Score:0.66
Offset:-4
Orientation:forward strand
Alignment:----AGCACTYAAGKTG
CATAACCACTTAACAAC
 A C G T A C G T A C G T A C G T C G T A A T C G G T A C G C T A A T G C A C G T A G T C G T C A T C G A A T C G A C T G C A G T A C T G
T G A C G C T A C G A T T C G A G C T A T A G C A G T C C G T A G T A C A G C T A G C T G C T A C G T A T A G C T G C A G T C A G A T C