Information for 3-CTGCCACCTT (Motif 13)

T G A C C A G T A T C G T A G C A G T C C G T A A G T C T G A C C A G T G A C T
Reverse Opposite:
C T G A G T C A A C T G T C A G G C A T A C T G A T C G T A G C G T C A A C T G
p-value:1e-9
log p-value:-2.086e+01
Information Content per bp:1.687
Number of Target Sequences with motif65.0
Percentage of Target Sequences with motif7.91%
Number of Background Sequences with motif1579.1
Percentage of Background Sequences with motif3.43%
Average Position of motif in Targets53.1 +/- 30.0bp
Average Position of motif in Background50.3 +/- 32.9bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

YY1/MA0095.2/Jaspar

Match Rank:1
Score:0.72
Offset:-1
Orientation:reverse strand
Alignment:-CTGCCACCTT-
GCNGCCATCTTG
A C G T T G A C C A G T A T C G T A G C A G T C C G T A A G T C T G A C C A G T G A C T A C G T
C A T G A G T C T G A C C A T G A G T C A G T C C T G A A C G T A G T C A G C T G A C T A C T G

Hic1/MA0739.1/Jaspar

Match Rank:2
Score:0.71
Offset:0
Orientation:forward strand
Alignment:CTGCCACCTT
ATGCCAACC-
T G A C C A G T A T C G T A G C A G T C C G T A A G T C T G A C C A G T G A C T
T C G A A G C T T C A G T A G C G T A C G T C A T C G A A T G C A G T C A C G T

YY1(Zf)/Promoter/Homer

Match Rank:3
Score:0.71
Offset:-1
Orientation:reverse strand
Alignment:-CTGCCACCTT-
GCCGCCATCTTG
A C G T T G A C C A G T A T C G T A G C A G T C C G T A A G T C T G A C C A G T G A C T A C G T
C A T G G A T C A T G C C T A G A G T C A G T C C G T A A C G T A T G C A G C T A C G T A T C G

Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer

Match Rank:4
Score:0.70
Offset:1
Orientation:forward strand
Alignment:CTGCCACCTT
-TGTCANYT-
T G A C C A G T A T C G T A G C A G T C C G T A A G T C T G A C C A G T G A C T
A C G T A G C T C A T G G C A T G A T C T G C A C T A G G A T C A C G T A C G T

Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:5
Score:0.69
Offset:1
Orientation:reverse strand
Alignment:CTGCCACCTT
-TGACACCT-
T G A C C A G T A T C G T A G C A G T C C G T A A G T C T G A C C A G T G A C T
A C G T G A C T T C A G C T G A A G T C C T G A T A G C G A T C G A C T A C G T

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:6
Score:0.69
Offset:-4
Orientation:forward strand
Alignment:----CTGCCACCTT
CTGTCTGTCACCT-
A C G T A C G T A C G T A C G T T G A C C A G T A T C G T A G C A G T C C G T A A G T C T G A C C A G T G A C T
T A G C G C A T T C A G A C G T A G T C A C G T T A C G C A G T A T G C G C T A T A G C G A T C G A C T A C G T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:7
Score:0.69
Offset:-3
Orientation:reverse strand
Alignment:---CTGCCACCTT
TGTCTGDCACCT-
A C G T A C G T A C G T T G A C C A G T A T C G T A G C A G T C C G T A A G T C T G A C C A G T G A C T
G C A T A C T G C G A T A G T C A C G T T A C G C A T G A G T C C G T A T A G C G A T C G A C T A C G T

PB0029.1_Hic1_1/Jaspar

Match Rank:8
Score:0.67
Offset:-3
Orientation:forward strand
Alignment:---CTGCCACCTT---
ACTATGCCAACCTACC
A C G T A C G T A C G T T G A C C A G T A T C G T A G C A G T C C G T A A G T C T G A C C A G T G A C T A C G T A C G T A C G T
C G T A A G T C A C G T C T G A A C G T C T A G A T G C A G T C G T C A T G C A A G T C A G T C G C A T C T G A G A T C G A T C

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:9
Score:0.67
Offset:0
Orientation:forward strand
Alignment:CTGCCACCTT
TTGCCAAG--
T G A C C A G T A T C G T A G C A G T C C G T A A G T C T G A C C A G T G A C T
A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G A C G T A C G T

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:10
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--CTGCCACCTT
VGCTGWCAVB--
A C G T A C G T T G A C C A G T A T C G T A G C A G T C C G T A A G T C T G A C C A G T G A C T
T C A G T A C G T A G C A C G T A C T G C G A T A G T C C G T A T A C G A G T C A C G T A C G T