Information for 11-CCATGGGACAGTC (Motif 10)

A G T C A G T C C G T A A C G T A C T G A C T G A C T G C G T A A G T C C G T A A C T G A C G T A G T C
Reverse Opposite:
A C T G C G T A A G T C A C G T A C T G A C G T T A G C G T A C A G T C G T C A A C G T A C T G A C T G
p-value:1e-9
log p-value:-2.150e+01
Information Content per bp:1.914
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.61%
Number of Background Sequences with motif2.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets68.8 +/- 22.5bp
Average Position of motif in Background17.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:1
Score:0.62
Offset:1
Orientation:forward strand
Alignment:CCATGGGACAGTC
-CCAGGAACAG--
 A G T C A G T C C G T A A C G T A C T G A C T G A C T G C G T A A G T C C G T A A C T G A C G T A G T C
A C G T T A G C G T A C C G T A C T A G A C T G T G C A C G T A A T G C C G T A A T C G A C G T A C G T

USF2/MA0526.1/Jaspar

Match Rank:2
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-CCATGGGACAGTC
GTCATGTGACC---
 A C G T A G T C A G T C C G T A A C G T A C T G A C T G A C T G C G T A A G T C C G T A A C T G A C G T A G T C
T C A G A G C T A G T C C G T A A G C T A C T G A C G T A C T G T C G A A G T C G A T C A C G T A C G T A C G T

MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer

Match Rank:3
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-CCATGGGACAGTC
RTCATGTGAC----
 A C G T A G T C A G T C C G T A A C G T A C T G A C T G A C T G C G T A A G T C C G T A A C T G A C G T A G T C
T C A G A G C T A T G C C G T A A G C T T C A G C A G T A C T G C T G A A G T C A C G T A C G T A C G T A C G T

USF1/MA0093.2/Jaspar

Match Rank:4
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-CCATGGGACAGTC
GCCACGTGACC---
 A C G T A G T C A G T C C G T A A C G T A C T G A C T G A C T G C G T A A G T C C G T A A C T G A C G T A G T C
T C A G A G T C G T A C C G T A A G T C T C A G A C G T A C T G C T G A A G T C G A T C A C G T A C G T A C G T

PB0147.1_Max_2/Jaspar

Match Rank:5
Score:0.55
Offset:-3
Orientation:forward strand
Alignment:---CCATGGGACAGTC
GTGCCACGCGACTG--
 A C G T A C G T A C G T A G T C A G T C C G T A A C G T A C T G A C T G A C T G C G T A A G T C C G T A A C T G A C G T A G T C
A C T G A G C T A C T G G A T C A G T C C G T A A G T C T C A G G A T C A C T G T C G A T G A C C A G T C A T G A C G T A C G T

EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer

Match Rank:6
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--CCATGGGACAGTC
TCCCNNGGGACN---
 A C G T A C G T A G T C A G T C C G T A A C G T A C T G A C T G A C T G C G T A A G T C C G T A A C T G A C G T A G T C
G A C T A G T C A G T C A G T C G A C T C T G A A C T G C T A G A C T G C T G A T A G C G A T C A C G T A C G T A C G T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:7
Score:0.55
Offset:2
Orientation:forward strand
Alignment:CCATGGGACAGTC-
--AGGTGHCAGACA
 A G T C A G T C C G T A A C G T A C T G A C T G A C T G C G T A A G T C C G T A A C T G A C G T A G T C A C G T
A C G T A C G T C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:8
Score:0.54
Offset:2
Orientation:reverse strand
Alignment:CCATGGGACAGTC--
--AGGTGNCAGACAG
 A G T C A G T C C G T A A C G T A C T G A C T G A C T G C G T A A G T C C G T A A C T G A C G T A G T C A C G T A C G T
A C G T A C G T C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G

EBF1/MA0154.3/Jaspar

Match Rank:9
Score:0.54
Offset:-4
Orientation:forward strand
Alignment:----CCATGGGACAGTC
ATTCCCAAGGGAAT---
 A C G T A C G T A C G T A C G T A G T C A G T C C G T A A C G T A C T G A C T G A C T G C G T A A G T C C G T A A C T G A C G T A G T C
C T G A A C G T G A C T A T G C A G T C A G T C G C T A C G T A T C A G T C A G C A T G C T G A G T C A G A C T A C G T A C G T A C G T

NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer

Match Rank:10
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-CCATGGGACAGTC
KCCACGTGAC----
 A C G T A G T C A G T C C G T A A C G T A C T G A C T G A C T G C G T A A G T C C G T A A C T G A C G T A G T C
A C T G T G A C G T A C C G T A A G T C T A C G A C G T A C T G G T C A A G T C A C G T A C G T A C G T A C G T