Information for 4-TTTTTGGCAGAGTGHA (Motif 5)

C G A T C A G T A C G T A C G T C G A T A C T G A C T G T G A C C G T A C T A G C G T A C T A G C A G T A C T G G A C T G T C A
Reverse Opposite:
A C G T C T G A G T A C G C T A A G T C A C G T A G T C C G A T A C T G A G T C A G T C C G T A T C G A C G T A G C T A C G T A
p-value:1e-12
log p-value:-2.776e+01
Information Content per bp:1.705
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif1.09%
Number of Background Sequences with motif5.3
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets51.9 +/- 24.8bp
Average Position of motif in Background33.1 +/- 20.6bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIC/MA0161.1/Jaspar

Match Rank:1
Score:0.64
Offset:3
Orientation:forward strand
Alignment:TTTTTGGCAGAGTGHA
---TTGGCA-------
 C G A T C A G T A C G T A C G T C G A T A C T G A C T G T G A C C G T A C T A G C G T A C T A G C A G T A C T G G A C T G T C A
A C G T A C G T A C G T G A C T C A G T T C A G C T A G G T A C C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NFIA/MA0670.1/Jaspar

Match Rank:2
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:TTTTTGGCAGAGTGHA
-NNTTGGCANN-----
 C G A T C A G T A C G T A C G T C G A T A C T G A C T G T G A C C G T A C T A G C G T A C T A G C A G T A C T G G A C T G T C A
A C G T G C T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A G T A C A G T C A C G T A C G T A C G T A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:3
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:TTTTTGGCAGAGTGHA
--NTTGGCANN-----
 C G A T C A G T A C G T A C G T C G A T A C T G A C T G T G A C C G T A C T A G C G T A C T A G C A G T A C T G G A C T G T C A
A C G T A C G T A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G A C G T A C G T A C G T A C G T A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:4
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:TTTTTGGCAGAGTGHA
--CTTGGCAA------
 C G A T C A G T A C G T A C G T C G A T A C T G A C T G T G A C C G T A C T A G C G T A C T A G C A G T A C T G G A C T G T C A
A C G T A C G T A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A A C G T A C G T A C G T A C G T A C G T A C G T

THAP1/MA0597.1/Jaspar

Match Rank:5
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:TTTTTGGCAGAGTGHA
-TNNGGGCAG------
 C G A T C A G T A C G T A C G T C G A T A C T G A C T G T G A C C G T A C T A G C G T A C T A G C A G T A C T G G A C T G T C A
A C G T C A G T T C A G G T A C C A T G C A T G C T A G G T A C C T G A T C A G A C G T A C G T A C G T A C G T A C G T A C G T

PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer

Match Rank:6
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:TTTTTGGCAGAGTGHA
--TGGGGCAAAGGTCA
 C G A T C A G T A C G T A C G T C G A T A C T G A C T G T G A C C G T A C T A G C G T A C T A G C A G T A C T G G A C T G T C A
A C G T A C G T C A G T C T A G C A T G C T A G C A T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C G C T A

RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer

Match Rank:7
Score:0.55
Offset:2
Orientation:forward strand
Alignment:TTTTTGGCAGAGTGHA
--TAGGGCAAAGGTCA
 C G A T C A G T A C G T A C G T C G A T A C T G A C T G T G A C C G T A C T A G C G T A C T A G C A G T A C T G G A C T G T C A
A C G T A C G T A G C T C T G A C T A G C T A G A C T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C T C G A

NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:8
Score:0.55
Offset:3
Orientation:reverse strand
Alignment:TTTTTGGCAGAGTGHA---
---TTGGCANNNTGCCAAG
 C G A T C A G T A C G T A C G T C G A T A C T G A C T G T G A C C G T A C T A G C G T A C T A G C A G T A C T G G A C T G T C A A C G T A C G T A C G T
A C G T A C G T A C G T G A C T C A G T A C T G C T A G T G A C G C T A T A G C C G T A T A C G C G A T A C T G G A T C G T A C G T C A C T G A T C A G

Hic1/MA0739.1/Jaspar

Match Rank:9
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:TTTTTGGCAGAGTGHA
-GGTTGGCAT------
 C G A T C A G T A C G T A C G T C G A T A C T G A C T G T G A C C G T A C T A G C G T A C T A G C A G T A C T G G A C T G T C A
A C G T T C A G T A C G A G C T C A G T C A T G A T C G A G T C T C G A A G C T A C G T A C G T A C G T A C G T A C G T A C G T

NFATC2/MA0152.1/Jaspar

Match Rank:10
Score:0.55
Offset:4
Orientation:reverse strand
Alignment:TTTTTGGCAGAGTGHA
----TGGAAAA-----
 C G A T C A G T A C G T A C G T C G A T A C T G A C T G T G A C C G T A C T A G C G T A C T A G C A G T A C T G G A C T G T C A
A C G T A C G T A C G T A C G T C G A T A C T G A C T G C G T A C G T A T C G A G C T A A C G T A C G T A C G T A C G T A C G T