Information for 1-CWTTWAAAWYMWGAYT (Motif 4)

A G T C C G T A A C G T A C G T C G A T C T G A C G T A C G T A C G T A G A C T T G A C C G A T A C T G C G T A G A C T A C G T
Reverse Opposite:
C G T A C T G A A C G T G T A C C G T A A C T G C T G A C G A T C G A T A C G T A G C T G C T A C G T A G T C A C G A T A C T G
p-value:1e-16
log p-value:-3.740e+01
Information Content per bp:1.799
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif1.38%
Number of Background Sequences with motif0.7
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets39.8 +/- 13.4bp
Average Position of motif in Background79.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

LIN54/MA0619.1/Jaspar

Match Rank:1
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:CWTTWAAAWYMWGAYT
NATTCAAAT-------
 A G T C C G T A A C G T A C G T C G A T C T G A C G T A C G T A C G T A G A C T T G A C C G A T A C T G C G T A G A C T A C G T
C T G A C T G A A C G T A C G T A G T C C T G A C G T A C G T A G C A T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer

Match Rank:2
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--CWTTWAAAWYMWGAYT
NGCAATTAAA--------
 A C G T A C G T A G T C C G T A A C G T A C G T C G A T C T G A C G T A C G T A C G T A G A C T T G A C C G A T A C T G C G T A G A C T A C G T
T A C G A T C G G A T C G T C A C T G A G C A T C G A T G C T A T C G A G C T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PH0078.1_Hoxd13/Jaspar

Match Rank:3
Score:0.57
Offset:-4
Orientation:forward strand
Alignment:----CWTTWAAAWYMWGAYT
CTACCAATAAAATTCT----
 A C G T A C G T A C G T A C G T A G T C C G T A A C G T A C G T C G A T C T G A C G T A C G T A C G T A G A C T T G A C C G A T A C T G C G T A G A C T A C G T
G T A C C G A T G C T A A G T C G A T C G C T A C G T A A G C T C G T A C G T A C G T A G C T A G A C T G A C T G T A C G A C T A C G T A C G T A C G T A C G T

PB0042.1_Mafk_1/Jaspar

Match Rank:4
Score:0.55
Offset:2
Orientation:forward strand
Alignment:CWTTWAAAWYMWGAYT-
--TAAAAATGCTGACTT
 A G T C C G T A A C G T A C G T C G A T C T G A C G T A C G T A C G T A G A C T T G A C C G A T A C T G C G T A G A C T A C G T A C G T
A C G T A C G T C G A T C G T A C G T A C G T A G C T A C G T A G A C T C A T G G T A C G C A T C A T G C G T A A G T C G C A T G A C T

CHR(?)/Hela-CellCycle-Expression/Homer

Match Rank:5
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:CWTTWAAAWYMWGAYT
-TTTGAAACCG-----
 A G T C C G T A A C G T A C G T C G A T C T G A C G T A C G T A C G T A G A C T T G A C C G A T A C T G C G T A G A C T A C G T
A C G T A C G T A C G T A C G T T A C G C G T A C T G A C G T A G T A C A G T C A T C G A C G T A C G T A C G T A C G T A C G T

TATA-Box(TBP)/Promoter/Homer

Match Rank:6
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-CWTTWAAAWYMWGAYT
CCTTTTATAGNC-----
 A C G T A G T C C G T A A C G T A C G T C G A T C T G A C G T A C G T A C G T A G A C T T G A C C G A T A C T G C G T A G A C T A C G T
A T G C G A T C G A C T A G C T C G A T C G A T G T C A C G A T T C G A A T C G T A G C T A G C A C G T A C G T A C G T A C G T A C G T

PH0057.1_Hoxb13/Jaspar

Match Rank:7
Score:0.53
Offset:-4
Orientation:forward strand
Alignment:----CWTTWAAAWYMWGAYT
AACCCAATAAAATTCG----
 A C G T A C G T A C G T A C G T A G T C C G T A A C G T A C G T C G A T C T G A C G T A C G T A C G T A G A C T T G A C C G A T A C T G C G T A G A C T A C G T
T G C A C T G A G T A C A G T C G A T C G C T A C T G A A G C T C G T A C G T A G C T A T G C A G C A T G C A T G A T C T A C G A C G T A C G T A C G T A C G T

HOXA13/MA0650.1/Jaspar

Match Rank:8
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-CWTTWAAAWYMWGAYT
CCAATAAAAA-------
 A C G T A G T C C G T A A C G T A C G T C G A T C T G A C G T A C G T A C G T A G A C T T G A C C G A T A C T G C G T A G A C T A C G T
T A G C A G T C G T C A C G T A A C G T G C T A C G T A G T C A T G C A G T C A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PH0075.1_Hoxd10/Jaspar

Match Rank:9
Score:0.53
Offset:-4
Orientation:forward strand
Alignment:----CWTTWAAAWYMWGAYT
AATGCAATAAAATTTAT---
 A C G T A C G T A C G T A C G T A G T C C G T A A C G T A C G T C G A T C T G A C G T A C G T A C G T A G A C T T G A C C G A T A C T G C G T A G A C T A C G T
T G C A C T G A A C G T T C A G G A T C G T C A C G T A A G C T C G T A C G T A C G T A T C G A G A C T C G A T C G A T C G T A G C A T A C G T A C G T A C G T

Hoxd9/MA0913.1/Jaspar

Match Rank:10
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-CWTTWAAAWYMWGAYT
GCAATAAAAA-------
 A C G T A G T C C G T A A C G T A C G T C G A T C T G A C G T A C G T A C G T A G A C T T G A C C G A T A C T G C G T A G A C T A C G T
T C A G G A T C T G C A C T G A C G A T G C T A G C T A G C T A C G T A G C T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T