Information for 5-YTTTKCTGAATCCAAA (Motif 12)

G A T C C G A T C A G T A C G T A C T G G T A C C A G T A C T G G T C A G T C A A C G T T A G C A G T C C T G A C G T A C G T A
Reverse Opposite:
C G A T C G A T A G C T T C A G A C T G G T C A C A G T A C G T G T A C G C T A C A T G G T A C C G T A G T C A C G T A C T A G
p-value:1e-9
log p-value:-2.153e+01
Information Content per bp:1.717
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.86%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets43.6 +/- 11.3bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

FOXH1/MA0479.1/Jaspar

Match Rank:1
Score:0.60
Offset:5
Orientation:forward strand
Alignment:YTTTKCTGAATCCAAA
-----TCCAATCCACA
 G A T C C G A T C A G T A C G T A C T G G T A C C A G T A C T G G T C A G T C A A C G T T A G C A G T C C T G A C G T A C G T A
A C G T A C G T A C G T A C G T A C G T A G C T A G T C T A G C C G T A C G T A A C G T G T A C G T A C C G T A A G T C C G T A

Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.56
Offset:6
Orientation:reverse strand
Alignment:YTTTKCTGAATCCAAA--
------SSAATCCACANN
 G A T C C G A T C A G T A C G T A C T G G T A C C A G T A C T G G T C A G T C A A C G T T A G C A G T C C T G A C G T A C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A T G C T A G C C T G A C G T A A C G T G T A C G T A C C T G A A G T C C G T A C T G A G T A C

PB0178.1_Sox8_2/Jaspar

Match Rank:3
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-YTTTKCTGAATCCAAA
NNTNTCATGAATGT---
 A C G T G A T C C G A T C A G T A C G T A C T G G T A C C A G T A C T G G T C A G T C A A C G T T A G C A G T C C T G A C G T A C G T A
A T G C T A C G C A G T A C T G C G A T G A T C T G C A A G C T C T A G C G T A T C G A C G A T C T A G G A C T A C G T A C G T A C G T

PB0037.1_Isgf3g_1/Jaspar

Match Rank:4
Score:0.54
Offset:5
Orientation:forward strand
Alignment:YTTTKCTGAATCCAAA----
-----CAAAATCGAAACTAA
 G A T C C G A T C A G T A C G T A C T G G T A C C A G T A C T G G T C A G T C A A C G T T A G C A G T C C T G A C G T A C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T G A C C T G A C T G A C G T A G C T A G C A T A G T C C T A G G T C A C G T A G C T A T A G C G A C T C G T A G C T A

LIN54/MA0619.1/Jaspar

Match Rank:5
Score:0.52
Offset:8
Orientation:reverse strand
Alignment:YTTTKCTGAATCCAAA-
--------NATTCAAAT
 G A T C C G A T C A G T A C G T A C T G G T A C C A G T A C T G G T C A G T C A A C G T T A G C A G T C C T G A C G T A C G T A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T G A C T G A A C G T A C G T A G T C C T G A C G T A C G T A G C A T

POU2F2/MA0507.1/Jaspar

Match Rank:6
Score:0.52
Offset:7
Orientation:reverse strand
Alignment:YTTTKCTGAATCCAAA----
-------ATATGCAAATNNN
 G A T C C G A T C A G T A C G T A C T G G T A C C A G T A C T G G T C A G T C A A C G T T A G C A G T C C T G A C G T A C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A G A C T C T G A A C G T C T A G G A T C C G T A C G T A C G T A C G A T C A T G G T C A C T G A

Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:7
Score:0.52
Offset:2
Orientation:forward strand
Alignment:YTTTKCTGAATCCAAA
--ATGCATAATTCA--
 G A T C C G A T C A G T A C G T A C T G G T A C C A G T A C T G G T C A G T C A A C G T T A G C A G T C C T G A C G T A C G T A
A C G T A C G T G C T A C G A T C T A G G T A C G C T A C G A T C G T A G C T A C G A T C A G T G A T C G C T A A C G T A C G T

Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer

Match Rank:8
Score:0.51
Offset:3
Orientation:reverse strand
Alignment:YTTTKCTGAATCCAAA--
---ATTTGCATACAATGG
 G A T C C G A T C A G T A C G T A C T G G T A C C A G T A C T G G T C A G T C A A C G T T A G C A G T C C T G A C G T A C G T A A C G T A C G T
A C G T A C G T A C G T G T C A A G C T G A C T C G A T T C A G T G A C C G T A G A C T C G T A A T G C C G T A C G T A C G A T C T A G T C A G

PB0171.1_Sox18_2/Jaspar

Match Rank:9
Score:0.51
Offset:2
Orientation:forward strand
Alignment:YTTTKCTGAATCCAAA--
--GGACTGAATTCATGCC
 G A T C C G A T C A G T A C G T A C T G G T A C C A G T A C T G G T C A G T C A A C G T T A G C A G T C C T G A C G T A C G T A A C G T A C G T
A C G T A C G T C T A G A C T G C T G A A T G C A G C T C T A G G T C A C T G A G A C T C A G T G A T C T C G A C G A T C T A G G T A C T G A C

Pitx1/MA0682.1/Jaspar

Match Rank:10
Score:0.51
Offset:6
Orientation:forward strand
Alignment:YTTTKCTGAATCCAAA
------TTAATCCC--
 G A T C C G A T C A G T A C G T A C T G G T A C C A G T A C T G G T C A G T C A A C G T T A G C A G T C C T G A C G T A C G T A
A C G T A C G T A C G T A C G T A C G T A C G T G A C T G C A T T C G A C G T A C A G T G A T C G A T C G T A C A C G T A C G T