Information for 3-CAGAGTGTCTCTCACC (Motif 6)

G T A C C G T A C T A G C G T A T A C G A C G T C T A G A G C T A G T C A C G T A G T C A C G T A G T C C G T A A G T C A G T C
Reverse Opposite:
C T A G A C T G C G A T A C T G C G T A A C T G C G T A A C T G C T G A A G T C C G T A A G T C A C G T A G T C C G A T A C T G
p-value:1e-11
log p-value:-2.660e+01
Information Content per bp:1.910
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.79%
Number of Background Sequences with motif0.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets32.6 +/- 20.2bp
Average Position of motif in Background33.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:1
Score:0.69
Offset:4
Orientation:forward strand
Alignment:CAGAGTGTCTCTCACC-
----CTGTCTGTCACCT
 G T A C C G T A C T A G C G T A T A C G A C G T C T A G A G C T A G T C A C G T A G T C A C G T A G T C C G T A A G T C A G T C A C G T
A C G T A C G T A C G T A C G T T A G C G C A T T C A G A C G T A G T C A C G T T A C G C A G T A T G C G C T A T A G C G A T C G A C T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.67
Offset:5
Orientation:reverse strand
Alignment:CAGAGTGTCTCTCACC-
-----TGTCTGDCACCT
 G T A C C G T A C T A G C G T A T A C G A C G T C T A G A G C T A G T C A C G T A G T C A C G T A G T C C G T A A G T C A G T C A C G T
A C G T A C G T A C G T A C G T A C G T G C A T A C T G C G A T A G T C A C G T T A C G C A T G A G T C C G T A T A G C G A T C G A C T

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:3
Score:0.55
Offset:3
Orientation:forward strand
Alignment:CAGAGTGTCTCTCACC
---SCTGTCAVTCAV-
 G T A C C G T A C T A G C G T A T A C G A C G T C T A G A G C T A G T C A C G T A G T C A C G T A G T C C G T A A G T C A G T C
A C G T A C G T A C G T T A C G A T G C G A C T A C T G A G C T A G T C G T C A T G C A A C G T A G T C G C T A T G C A A C G T

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:4
Score:0.55
Offset:3
Orientation:forward strand
Alignment:CAGAGTGTCTCTCACC
---NCTGTCAATCAN-
 G T A C C G T A C T A G C G T A T A C G A C G T C T A G A G C T A G T C A C G T A G T C A C G T A G T C C G T A A G T C A G T C
A C G T A C G T A C G T T A G C T A G C G A C T C T A G A G C T A G T C G T C A T G C A A C G T A T G C G C T A T G C A A C G T

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:5
Score:0.55
Offset:2
Orientation:forward strand
Alignment:CAGAGTGTCTCTCACC
--GSCTGTCACTCA--
 G T A C C G T A C T A G C G T A T A C G A C G T C T A G A G C T A G T C A C G T A G T C A C G T A G T C C G T A A G T C A G T C
A C G T A C G T C T A G A T G C A T G C C G A T A C T G G A C T A T G C G C T A T G A C A G C T T A G C G C T A A C G T A C G T

PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer

Match Rank:6
Score:0.53
Offset:4
Orientation:forward strand
Alignment:CAGAGTGTCTCTCACC
----AGGTCTCTAACC
 G T A C C G T A C T A G C G T A T A C G A C G T C T A G A G C T A G T C A C G T A G T C A C G T A G T C C G T A A G T C A G T C
A C G T A C G T A C G T A C G T C T G A T C A G A C T G C A G T A G T C G A C T A G T C A C G T C G T A G C T A A T G C G A T C

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:7
Score:0.53
Offset:0
Orientation:forward strand
Alignment:CAGAGTGTCTCTCACC
TTRAGTGSYK------
 G T A C C G T A C T A G C G T A T A C G A C G T C T A G A G C T A G T C A C G T A G T C A C G T A G T C C G T A A G T C A G T C
A G C T G A C T C T A G C G T A C A T G C G A T C T A G A T C G G A C T C A G T A C G T A C G T A C G T A C G T A C G T A C G T

MGA/MA0801.1/Jaspar

Match Rank:8
Score:0.50
Offset:9
Orientation:reverse strand
Alignment:CAGAGTGTCTCTCACC-
---------TCACACCT
 G T A C C G T A C T A G C G T A T A C G A C G T C T A G A G C T A G T C A C G T A G T C A C G T A G T C C G T A A G T C A G T C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A C T T G A C C T G A G A T C T C G A T A G C A G T C G A C T

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:9
Score:0.50
Offset:-1
Orientation:reverse strand
Alignment:-CAGAGTGTCTCTCACC
CTTGAGTGGCT------
 A C G T G T A C C G T A C T A G C G T A T A C G A C G T C T A G A G C T A G T C A C G T A G T C A C G T A G T C C G T A A G T C A G T C
A T G C G A C T C A G T C T A G C G T A A C T G C G A T A C T G A T C G G A T C G A C T A C G T A C G T A C G T A C G T A C G T A C G T

TBX1/MA0805.1/Jaspar

Match Rank:10
Score:0.49
Offset:9
Orientation:reverse strand
Alignment:CAGAGTGTCTCTCACC-
---------TCACACCT
 G T A C C G T A C T A G C G T A T A C G A C G T C T A G A G C T A G T C A C G T A G T C A C G T A G T C C G T A A G T C A G T C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T G A C C T G A A T G C T C G A A G T C A G T C G A C T