Information for 13-GAGAVATCACAGTGGG (Motif 23)

T A C G C G T A A C T G G T C A T A C G G C T A C A G T A G T C C G T A G T A C C G T A T A C G C G A T C T A G A C T G C A T G
Reverse Opposite:
G A T C A G T C A G T C C G T A A T G C C G A T A C T G C G A T T C A G G T C A C A G T A G T C A C G T A G T C A C G T A G T C
p-value:1e-8
log p-value:-1.903e+01
Information Content per bp:1.716
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif1.11%
Number of Background Sequences with motif18.1
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets31.6 +/- 27.5bp
Average Position of motif in Background62.8 +/- 25.4bp
Strand Bias (log2 ratio + to - strand density)1.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0132.1_Hbp1_2/Jaspar

Match Rank:1
Score:0.58
Offset:3
Orientation:reverse strand
Alignment:GAGAVATCACAGTGGG----
---NNTNNACAATGGGANNN
 T A C G C G T A A C T G G T C A T A C G G C T A C A G T A G T C C G T A G T A C C G T A T A C G C G A T C T A G A C T G C A T G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C G T A T A C G A G C T C G T A A G T C G T C A G T A C C G T A C G T A C G A T C T A G C T A G A C T G T C G A G T C A G A T C G C T A

PB0126.1_Gata5_2/Jaspar

Match Rank:2
Score:0.58
Offset:-4
Orientation:forward strand
Alignment:----GAGAVATCACAGTGGG
GACAGAGATATCAGTGT---
 A C G T A C G T A C G T A C G T T A C G C G T A A C T G G T C A T A C G G C T A C A G T A G T C C G T A G T A C C G T A T A C G C G A T C T A G A C T G C A T G
T C A G T G C A A G T C G T C A C T A G G T C A C A T G T C G A C A G T G T C A C A G T G A T C C G T A C T A G G A C T A C G T A C G T A C G T A C G T A C G T

PB0207.1_Zic3_2/Jaspar

Match Rank:3
Score:0.56
Offset:4
Orientation:forward strand
Alignment:GAGAVATCACAGTGGG---
----GAGCACAGCAGGACA
 T A C G C G T A A C T G G T C A T A C G G C T A C A G T A G T C C G T A G T A C C G T A T A C G C G A T C T A G A C T G C A T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C A T G C G T A C T A G T G A C C T G A A G T C C G T A C T A G A G T C C T G A A C T G A C T G G T C A T A G C C G T A

Sox2/MA0143.3/Jaspar

Match Rank:4
Score:0.56
Offset:7
Orientation:reverse strand
Alignment:GAGAVATCACAGTGGG
-------AACAAAGG-
 T A C G C G T A A C T G G T C A T A C G G C T A C A G T A G T C C G T A G T A C C G T A T A C G C G A T C T A G A C T G C A T G
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C G A C G T A A G T C C G T A C G T A C G T A A C T G A C T G A C G T

Tcf7/MA0769.1/Jaspar

Match Rank:5
Score:0.55
Offset:1
Orientation:forward strand
Alignment:GAGAVATCACAGTGGG
-AAAGATCAAAGG---
 T A C G C G T A A C T G G T C A T A C G G C T A C A G T A G T C C G T A G T A C C G T A T A C G C G A T C T A G A C T G C A T G
A C G T C T G A C T G A C G T A A T C G C G T A A C G T A T G C C G T A T C G A C G T A C T A G T C A G A C G T A C G T A C G T

PB0205.1_Zic1_2/Jaspar

Match Rank:6
Score:0.54
Offset:4
Orientation:forward strand
Alignment:GAGAVATCACAGTGGG---
----CCACACAGCAGGAGA
 T A C G C G T A A C T G G T C A T A C G G C T A C A G T A G T C C G T A G T A C C G T A T A C G C G A T C T A G A C T G C A T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A G T C G T A C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:7
Score:0.53
Offset:6
Orientation:reverse strand
Alignment:GAGAVATCACAGTGGG
------DCTCAGCAGG
 T A C G C G T A A C T G G T C A T A C G G C T A C A G T A G T C C G T A G T A C C G T A T A C G C G A T C T A G A C T G C A T G
A C G T A C G T A C G T A C G T A C G T A C G T C A G T G T A C G C A T A G T C G C T A A C T G A G T C C T G A A C T G A C T G

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:8
Score:0.53
Offset:6
Orientation:reverse strand
Alignment:GAGAVATCACAGTGGG-----
------DCHCAGCAGGRGGCC
 T A C G C G T A A C T G G T C A T A C G G C T A C A G T A G T C C G T A G T A C C G T A T A C G C G A T C T A G A C T G C A T G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C

LEF1/MA0768.1/Jaspar

Match Rank:9
Score:0.53
Offset:1
Orientation:forward strand
Alignment:GAGAVATCACAGTGGG
-AAAGATCAAAGGGTT
 T A C G C G T A A C T G G T C A T A C G G C T A C A G T A G T C C G T A G T A C C G T A T A C G C G A T C T A G A C T G C A T G
A C G T T C G A C T G A C T G A T A C G C G T A G C A T T A G C C G T A C T G A C T G A T C A G T C A G T C A G C G A T G C A T

PH0037.1_Hdx/Jaspar

Match Rank:10
Score:0.52
Offset:-3
Orientation:forward strand
Alignment:---GAGAVATCACAGTGGG
AAGGCGAAATCATCGCA--
 A C G T A C G T A C G T T A C G C G T A A C T G G T C A T A C G G C T A C A G T A G T C C G T A G T A C C G T A T A C G C G A T C T A G A C T G C A T G
C G T A C T G A A C T G C A T G G T A C C T A G T G C A C G T A C G T A A C G T A T G C G C T A G A C T G A T C A T C G G T A C T G C A A C G T A C G T