Information for 8-RAGSTTKAAKGAA (Motif 22)

C T A G C G T A A C T G A T G C A C G T A C G T A C G T C G T A C G T A C A T G A C T G C G T A C G T A
Reverse Opposite:
A C G T A C G T A G T C G T A C A C G T A C G T G T C A C G T A C G T A T A C G A G T C A C G T A G T C
p-value:1e-8
log p-value:-1.970e+01
Information Content per bp:1.874
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.79%
Number of Background Sequences with motif4.2
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets54.7 +/- 26.3bp
Average Position of motif in Background47.6 +/- 30.9bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.20
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0028.1_Hbp1_1/Jaspar

Match Rank:1
Score:0.69
Offset:1
Orientation:forward strand
Alignment:RAGSTTKAAKGAA----
-ACTATGAATGAATGAT
 C T A G C G T A A C T G A T G C A C G T A C G T A C G T C G T A C G T A C A T G A C T G C G T A C G T A A C G T A C G T A C G T A C G T
A C G T G C T A G T A C C G A T G C T A G C A T T A C G C G T A C G T A C G A T A C T G C T G A T C G A G A C T C A T G C T G A A G C T

PB0005.1_Bbx_1/Jaspar

Match Rank:2
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:RAGSTTKAAKGAA---
-NANTTCATTGAATTA
 C T A G C G T A A C T G A T G C A C G T A C G T A C G T C G T A C G T A C A T G A C T G C G T A C G T A A C G T A C G T A C G T
A C G T G A T C C G T A T A G C C G A T C G A T T G A C G C T A G C A T C G A T A C T G C G T A G C T A G A C T C G A T C G T A

Nr2e3/MA0164.1/Jaspar

Match Rank:3
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:RAGSTTKAAKGAA
AAGCTTG------
 C T A G C G T A A C T G A T G C A C G T A C G T A C G T C G T A C G T A C A T G A C T G C G T A C G T A
C G T A C G T A A C T G A T G C A C G T A C G T C T A G A C G T A C G T A C G T A C G T A C G T A C G T

PB0001.1_Arid3a_1/Jaspar

Match Rank:4
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:RAGSTTKAAKGAA----
NNNTTTTAATTAANNNN
 C T A G C G T A A C T G A T G C A C G T A C G T A C G T C G T A C G T A C A T G A C T G C G T A C G T A A C G T A C G T A C G T A C G T
C T A G C G T A C G T A C A G T G C A T G A C T A G C T C T G A C G T A C G A T G A C T T C G A C T G A C G T A T G A C T A G C A T G C

Stat4/MA0518.1/Jaspar

Match Rank:5
Score:0.59
Offset:3
Orientation:forward strand
Alignment:RAGSTTKAAKGAA----
---TTTCCAGGAAATGG
 C T A G C G T A A C T G A T G C A C G T A C G T A C G T C G T A C G T A C A T G A C T G C G T A C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A G C T G C A T C A G T T G A C G A T C C T G A C T A G C T A G C G T A C G T A T C G A A G C T T A C G T C A G

PH0095.1_Lhx5/Jaspar

Match Rank:6
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:RAGSTTKAAKGAA----
ANNATTTAATTAATTNN
 C T A G C G T A A C T G A T G C A C G T A C G T A C G T C G T A C G T A C A T G A C T G C G T A C G T A A C G T A C G T A C G T A C G T
T C G A C A T G C A G T C G T A C G A T G A C T G A C T T C G A C G T A C G A T A C G T C T G A C T G A G A C T C A G T G A T C A T C G

STAT1/MA0137.3/Jaspar

Match Rank:7
Score:0.56
Offset:3
Orientation:forward strand
Alignment:RAGSTTKAAKGAA-
---TTTCCAGGAAA
 C T A G C G T A A C T G A T G C A C G T A C G T A C G T C G T A C G T A C A T G A C T G C G T A C G T A A C G T
A C G T A C G T A C G T A C G T A G C T A C G T T G A C G A T C C T G A C T A G C A T G C T G A G T C A C T G A

NKX6-1/MA0674.1/Jaspar

Match Rank:8
Score:0.55
Offset:5
Orientation:reverse strand
Alignment:RAGSTTKAAKGAA
-----TTAATTAN
 C T A G C G T A A C T G A T G C A C G T A C G T A C G T C G T A C G T A C A T G A C T G C G T A C G T A
A C G T A C G T A C G T A C G T A C G T C G A T A G C T C G T A C G T A C A G T C A G T C T G A A T G C

PH0153.1_Prop1/Jaspar

Match Rank:9
Score:0.55
Offset:1
Orientation:forward strand
Alignment:RAGSTTKAAKGAA-----
-CGAATTAATTAAGAAAC
 C T A G C G T A A C T G A T G C A C G T A C G T A C G T C G T A C G T A C A T G A C T G C G T A C G T A A C G T A C G T A C G T A C G T A C G T
A C G T T G A C T C A G T G C A T C G A G A C T G A C T C G T A C G T A G A C T A C G T C T G A C T G A A C T G C G T A C G T A C T G A G A T C

STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer

Match Rank:10
Score:0.55
Offset:2
Orientation:forward strand
Alignment:RAGSTTKAAKGAA-
--NTTTCCNGGAAA
 C T A G C G T A A C T G A T G C A C G T A C G T A C G T C G T A C G T A C A T G A C T G C G T A C G T A A C G T
A C G T A C G T T C A G A G C T A C G T A C G T G T A C G A T C C G T A C T A G C A T G G T C A C G T A T C G A