Information for 1-CCTTGGDATGTAA (Motif 1)

A G T C A G T C A C G T A C G T A C T G A T C G C G T A C T G A A G C T A C T G A C G T C T G A C G T A
Reverse Opposite:
A C G T A G C T G T C A A G T C C T G A A G C T G A C T A T G C A G T C G T C A C G T A A C T G A C T G
p-value:1e-15
log p-value:-3.675e+01
Information Content per bp:1.845
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif1.26%
Number of Background Sequences with motif3.3
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets53.8 +/- 25.6bp
Average Position of motif in Background35.2 +/- 22.5bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:1
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:CCTTGGDATGTAA--
CATTGTTATGCAAAT
 A G T C A G T C A C G T A C G T A C T G A T C G C G T A C T G A A G C T A C T G A C G T C T G A C G T A A C G T A C G T
G A T C G C T A G A C T C G A T A T C G C G A T G A C T C G T A C G A T C A T G A G T C C G T A C T G A C G T A C G A T

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:2
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---CCTTGGDATGTAA
TGACCTTGAN------
 A C G T A C G T A C G T A G T C A G T C A C G T A C G T A C T G A T C G C G T A C T G A A G C T A C T G A C G T C T G A C G T A
G C A T C T A G C T G A T G A C G A T C A G C T C A G T A T C G C T G A T G C A A C G T A C G T A C G T A C G T A C G T A C G T

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:3
Score:0.61
Offset:-5
Orientation:reverse strand
Alignment:-----CCTTGGDATGTAA
BNTGDCCTTG--------
 A C G T A C G T A C G T A C G T A C G T A G T C A G T C A C G T A C G T A C T G A T C G C G T A C T G A A G C T A C T G A C G T C T G A C G T A
A T G C C A T G A C G T C T A G C T G A T G A C T G A C G A C T G C A T A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer

Match Rank:4
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---CCTTGGDATGTAA
TGACCTTGAV------
 A C G T A C G T A C G T A G T C A G T C A C G T A C G T A C T G A T C G C G T A C T G A A G C T A C T G A C G T C T G A C G T A
G C A T C T A G C T G A G A T C G T A C G A C T G A C T A T C G C T G A T G C A A C G T A C G T A C G T A C G T A C G T A C G T

Pou5f1::Sox2/MA0142.1/Jaspar

Match Rank:5
Score:0.60
Offset:0
Orientation:forward strand
Alignment:CCTTGGDATGTAA--
CTTTGTTATGCAAAT
 A G T C A G T C A C G T A C G T A C T G A T C G C G T A C T G A A G C T A C T G A C G T C T G A C G T A A C G T A C G T
A G T C G C A T A G C T C A G T T A C G C G A T G A C T G C T A C G A T A C T G A G T C C G T A C T G A C T G A C A G T

TEAD3/MA0808.1/Jaspar

Match Rank:6
Score:0.57
Offset:3
Orientation:reverse strand
Alignment:CCTTGGDATGTAA
---TGGAATGT--
 A G T C A G T C A C G T A C G T A C T G A T C G C G T A C T G A A G C T A C T G A C G T C T G A C G T A
A C G T A C G T A C G T G C A T C T A G A C T G G C T A C G T A A C G T A C T G G A C T A C G T A C G T

TEAD1/MA0090.2/Jaspar

Match Rank:7
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:CCTTGGDATGTAA
--NTGGAATGTG-
 A G T C A G T C A C G T A C G T A C T G A T C G C G T A C T G A A G C T A C T G A C G T C T G A C G T A
A C G T A C G T C T G A G C A T T C A G C A T G C G T A T C G A C A G T A C T G A G C T C T A G A C G T

Nr5a2/MA0505.1/Jaspar

Match Rank:8
Score:0.55
Offset:-5
Orientation:reverse strand
Alignment:-----CCTTGGDATGTAA
GCTGACCTTGAACTN---
 A C G T A C G T A C G T A C G T A C G T A G T C A G T C A C G T A C G T A C T G A T C G C G T A C T G A A G C T A C T G A C G T C T G A C G T A
T A C G T G A C G C A T T C A G C T G A A G T C A G T C A G C T C A G T A T C G C T G A T C G A G A T C G A C T A G C T A C G T A C G T A C G T

PB0014.1_Esrra_1/Jaspar

Match Rank:9
Score:0.54
Offset:-8
Orientation:reverse strand
Alignment:--------CCTTGGDATGTAA
NNNNATGACCTTGANTN----
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C A G T C A C G T A C G T A C T G A T C G C G T A C T G A A G C T A C T G A C G T C T G A C G T A
C A G T G T A C T C A G A G T C C G T A A G C T T C A G G C T A G A T C G T A C A G C T G A C T A T C G T C G A G T C A C A G T G T C A A C G T A C G T A C G T A C G T

Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer

Match Rank:10
Score:0.54
Offset:-4
Orientation:forward strand
Alignment:----CCTTGGDATGTAA
NTGACCTTGA-------
 A C G T A C G T A C G T A C G T A G T C A G T C A C G T A C G T A C T G A T C G C G T A C T G A A G C T A C T G A C G T C T G A C G T A
C A T G A G C T T A C G G T C A G T A C T A G C A G C T G A C T A T C G T C G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T