Information for 3-SCCACGGTCTGTS (Motif 3)

A T C G A G T C A G T C C G T A A G T C A T C G C T A G A C G T A T G C A C G T A C T G A C G T A T G C
Reverse Opposite:
A T C G C G T A A G T C C G T A A T C G C G T A A G T C A T G C A C T G A C G T A C T G A C T G A T G C
p-value:1e-13
log p-value:-3.041e+01
Information Content per bp:1.912
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.66%
Number of Background Sequences with motif1.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets67.3 +/- 15.4bp
Average Position of motif in Background49.9 +/- 12.5bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:1
Score:0.60
Offset:0
Orientation:forward strand
Alignment:SCCACGGTCTGTS-
GTCACGCTCNCTGA
 A T C G A G T C A G T C C G T A A G T C A T C G C T A G A C G T A T G C A C G T A C T G A C G T A T G C A C G T
A C T G G A C T A G T C C T G A G A T C T C A G A T G C G A C T A G T C A T G C T A G C A G C T A T C G T G C A

Zfx/MA0146.2/Jaspar

Match Rank:2
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---SCCACGGTCTGTS
GGGGCCGAGGCCTG--
 A C G T A C G T A C G T A T C G A G T C A G T C C G T A A G T C A T C G C T A G A C G T A T G C A C G T A C T G A C G T A T G C
A T C G A T C G T A C G C T A G A T G C G A T C A C T G T G C A T C A G A T C G A G T C A G T C A G C T T A C G A C G T A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.56
Offset:4
Orientation:forward strand
Alignment:SCCACGGTCTGTS
----CTGTCTGG-
 A T C G A G T C A G T C C G T A A G T C A T C G C T A G A C G T A T G C A C G T A C T G A C G T A T G C
A C G T A C G T A C G T A C G T A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G A C G T

ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer

Match Rank:4
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:SCCACGGTCTGTS
ACCACATCCTGT-
 A T C G A G T C A G T C C G T A A G T C A T C G C T A G A C G T A T G C A C G T A C T G A C G T A T G C
T G C A A G T C A G T C C G T A A G T C C G T A A C G T A G T C A G T C C A G T A T C G A G C T A C G T

POL009.1_DCE_S_II/Jaspar

Match Rank:5
Score:0.54
Offset:7
Orientation:forward strand
Alignment:SCCACGGTCTGTS
-------GCTGTG
 A T C G A G T C A G T C C G T A A G T C A T C G C T A G A C G T A T G C A C G T A C T G A C G T A T G C
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A C G T A G C C A G T A T C G G A C T A T C G

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:6
Score:0.54
Offset:2
Orientation:forward strand
Alignment:SCCACGGTCTGTS
--VBSYGTCTGG-
 A T C G A G T C A G T C C G T A A G T C A T C G C T A G A C G T A T G C A C G T A C T G A C G T A T G C
A C G T A C G T T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G A C G T

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:7
Score:0.54
Offset:0
Orientation:forward strand
Alignment:SCCACGGTCTGTS
NTCAAGGTCA---
 A T C G A G T C A G T C C G T A A G T C A T C G C T A G A C G T A T G C A C G T A C T G A C G T A T G C
A C G T G A C T A T G C G C T A C T G A C T A G A C T G G A C T A G T C C G T A A C G T A C G T A C G T

Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer

Match Rank:8
Score:0.53
Offset:0
Orientation:forward strand
Alignment:SCCACGGTCTGTS
BTCAAGGTCA---
 A T C G A G T C A G T C C G T A A G T C A T C G C T A G A C G T A T G C A C G T A C T G A C G T A T G C
A C G T G A C T T A G C C G T A C T G A C A T G C T A G G A C T G A T C C G T A A C G T A C G T A C G T

NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer

Match Rank:9
Score:0.53
Offset:3
Orientation:forward strand
Alignment:SCCACGGTCTGTS
---ACCATCTGTT
 A T C G A G T C A G T C C G T A A G T C A T C G C T A G A C G T A T G C A C G T A C T G A C G T A T G C
A C G T A C G T A C G T T C G A T G A C G T A C C G T A C A G T T G A C A C G T A C T G A G C T A G C T

ZNF354C/MA0130.1/Jaspar

Match Rank:10
Score:0.52
Offset:-1
Orientation:forward strand
Alignment:-SCCACGGTCTGTS
ATCCAC--------
 A C G T A T C G A G T C A G T C C G T A A G T C A T C G C T A G A C G T A T G C A C G T A C T G A C G T A T G C
T G C A G C A T A G T C A G T C C G T A A T G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T