Information for 8-GCCAGARACT (Motif 20)

A C T G A G T C A G T C C G T A A C T G C G T A C T A G C G T A A G T C A C G T
Reverse Opposite:
G T C A A C T G C G A T A G T C A C G T A G T C A C G T A C T G A C T G A G T C
p-value:1e-7
log p-value:-1.717e+01
Information Content per bp:1.899
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif1.21%
Number of Background Sequences with motif60.6
Percentage of Background Sequences with motif0.13%
Average Position of motif in Targets45.7 +/- 20.6bp
Average Position of motif in Background45.4 +/- 29.0bp
Strand Bias (log2 ratio + to - strand density)1.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:1
Score:0.71
Offset:-2
Orientation:reverse strand
Alignment:--GCCAGARACT
ATGCCAGACN--
 A C G T A C G T A C T G A G T C A G T C C G T A A C T G C G T A C T A G C G T A A G T C A C G T
C G T A G C A T C A T G T A G C A G T C C G T A C T A G C G T A G A T C T A G C A C G T A C G T

NFIC/MA0161.1/Jaspar

Match Rank:2
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-GCCAGARACT
TGCCAA-----
 A C G T A C T G A G T C A G T C C G T A A C T G C G T A C T A G C G T A A G T C A C G T
G C A T C A T G G A T C A G T C G T C A C T G A A C G T A C G T A C G T A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:3
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---GCCAGARACT
CGTGCCAAG----
 A C G T A C G T A C G T A C T G A G T C A G T C C G T A A C T G C G T A C T A G C G T A A G T C A C G T
T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T A C G T A C G T A C G T

PB0060.1_Smad3_1/Jaspar

Match Rank:4
Score:0.62
Offset:-4
Orientation:forward strand
Alignment:----GCCAGARACT---
CAAATCCAGACATCACA
 A C G T A C G T A C G T A C G T A C T G A G T C A G T C C G T A A C T G C G T A C T A G C G T A A G T C A C G T A C G T A C G T A C G T
G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A

PB0195.1_Zbtb3_2/Jaspar

Match Rank:5
Score:0.60
Offset:-5
Orientation:reverse strand
Alignment:-----GCCAGARACT-
NNNNTGCCAGTGATTG
 A C G T A C G T A C G T A C G T A C G T A C T G A G T C A G T C C G T A A C T G C G T A C T A G C G T A A G T C A C G T A C G T
G C T A G C A T C G A T G A T C G A C T T C A G T G A C T A G C C G T A A C T G A G C T C A T G C G T A A G C T C G A T T C A G

TFAP2C(var.2)/MA0814.1/Jaspar

Match Rank:6
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-GCCAGARACT
AGCCTCAGGCA
 A C G T A C T G A G T C A G T C C G T A A C T G C G T A C T A G C G T A A G T C A C G T
G T C A T A C G A T G C A G T C A G C T T A G C T C G A T C A G A T C G T A G C C G T A

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:7
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:GCCAGARACT-
-CCAGACRSVB
 A C T G A G T C A G T C C G T A A C T G C G T A C T A G C G T A A G T C A C G T A C G T
A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:8
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:GCCAGARACT
-CCAGACAG-
 A C T G A G T C A G T C C G T A A C T G C G T A C T A G C G T A A G T C A C G T
A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T

TFAP2B(var.2)/MA0812.1/Jaspar

Match Rank:9
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-GCCAGARACT
TGCCTGAGGCN
 A C G T A C T G A G T C A G T C C G T A A C T G C G T A C T A G C G T A A G T C A C G T
G C A T A T C G A T G C A G T C A C G T A T C G T C G A T C A G A T C G A T G C C A G T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:10
Score:0.59
Offset:-4
Orientation:forward strand
Alignment:----GCCAGARACT
AGGTGHCAGACA--
 A C G T A C G T A C G T A C G T A C T G A G T C A G T C C G T A A C T G C G T A C T A G C G T A A G T C A C G T
C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A A C G T A C G T