Information for 6-CMAGCCAATCAAA (Motif 7)

G A T C G T A C C G T A A C T G A G T C G T A C G T C A C T G A A C G T G T A C C G T A G T C A T C G A
Reverse Opposite:
A G C T A C G T A C G T C A T G C G T A A G C T A C G T A C T G T A C G A G T C A C G T A C T G C A T G
p-value:1e-10
log p-value:-2.420e+01
Information Content per bp:1.752
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif1.15%
Number of Background Sequences with motif23.3
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets47.6 +/- 25.0bp
Average Position of motif in Background59.6 +/- 32.4bp
Strand Bias (log2 ratio + to - strand density)1.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0057.1_Hoxb13/Jaspar

Match Rank:1
Score:0.74
Offset:1
Orientation:forward strand
Alignment:CMAGCCAATCAAA----
-AACCCAATAAAATTCG
 G A T C G T A C C G T A A C T G A G T C G T A C G T C A C T G A A C G T G T A C C G T A G T C A T C G A A C G T A C G T A C G T A C G T
A C G T T G C A C T G A G T A C A G T C G A T C G C T A C T G A A G C T C G T A C G T A G C T A T G C A G C A T G C A T G A T C T A C G

POL004.1_CCAAT-box/Jaspar

Match Rank:2
Score:0.72
Offset:-1
Orientation:forward strand
Alignment:-CMAGCCAATCAAA
ACTAGCCAATCA--
 A C G T G A T C G T A C C G T A A C T G A G T C G T A C G T C A C T G A A C G T G T A C C G T A G T C A T C G A
G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A A C G T A C G T

HOXB13/MA0901.1/Jaspar

Match Rank:3
Score:0.72
Offset:4
Orientation:forward strand
Alignment:CMAGCCAATCAAA-
----CCAATAAAAC
 G A T C G T A C C G T A A C T G A G T C G T A C G T C A C T G A A C G T G T A C C G T A G T C A T C G A A C G T
A C G T A C G T A C G T A C G T T A G C G A T C G T C A C G T A A G C T C G T A C G T A G T C A G T C A G T A C

Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer

Match Rank:4
Score:0.71
Offset:3
Orientation:forward strand
Alignment:CMAGCCAATCAAA
---NGCAATTAAA
 G A T C G T A C C G T A A C T G A G T C G T A C G T C A C T G A A C G T G T A C C G T A G T C A T C G A
A C G T A C G T A C G T T A C G A T C G G A T C G T C A C T G A G C A T C G A T G C T A T C G A G C T A

PH0075.1_Hoxd10/Jaspar

Match Rank:5
Score:0.70
Offset:1
Orientation:forward strand
Alignment:CMAGCCAATCAAA-----
-AATGCAATAAAATTTAT
 G A T C G T A C C G T A A C T G A G T C G T A C G T C A C T G A A C G T G T A C C G T A G T C A T C G A A C G T A C G T A C G T A C G T A C G T
A C G T T G C A C T G A A C G T T C A G G A T C G T C A C G T A A G C T C G T A C G T A C G T A T C G A G A C T C G A T C G A T C G T A G C A T

HOXD13/MA0909.1/Jaspar

Match Rank:6
Score:0.70
Offset:4
Orientation:forward strand
Alignment:CMAGCCAATCAAA-
----CCAATAAAAA
 G A T C G T A C C G T A A C T G A G T C G T A C G T C A C T G A A C G T G T A C C G T A G T C A T C G A A C G T
A C G T A C G T A C G T A C G T A T G C G A T C G T C A C G T A A G C T C G T A G C T A G T C A G T C A G T C A

HOXA13/MA0650.1/Jaspar

Match Rank:7
Score:0.69
Offset:4
Orientation:forward strand
Alignment:CMAGCCAATCAAA-
----CCAATAAAAA
 G A T C G T A C C G T A A C T G A G T C G T A C G T C A C T G A A C G T G T A C C G T A G T C A T C G A A C G T
A C G T A C G T A C G T A C G T T A G C A G T C G T C A C G T A A C G T G C T A C G T A G T C A T G C A G T C A

PH0078.1_Hoxd13/Jaspar

Match Rank:8
Score:0.69
Offset:1
Orientation:forward strand
Alignment:CMAGCCAATCAAA----
-CTACCAATAAAATTCT
 G A T C G T A C C G T A A C T G A G T C G T A C G T C A C T G A A C G T G T A C C G T A G T C A T C G A A C G T A C G T A C G T A C G T
A C G T G T A C C G A T G C T A A G T C G A T C G C T A C G T A A G C T C G T A C G T A C G T A G C T A G A C T G A C T G T A C G A C T

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:9
Score:0.69
Offset:3
Orientation:forward strand
Alignment:CMAGCCAATCAAA
---NCYAATAAAA
 G A T C G T A C C G T A A C T G A G T C G T A C G T C A C T G A A C G T G T A C C G T A G T C A T C G A
A C G T A C G T A C G T C G A T T A G C G A C T G T C A C G T A A C G T C G T A C G T A C G T A G C T A

PH0026.1_Duxbl/Jaspar

Match Rank:10
Score:0.68
Offset:0
Orientation:forward strand
Alignment:CMAGCCAATCAAA----
CGACCCAATCAACGGTG
 G A T C G T A C C G T A A C T G A G T C G T A C G T C A C T G A A C G T G T A C C G T A G T C A T C G A A C G T A C G T A C G T A C G T
A G T C C T A G C T G A A G T C A G T C A G T C G T C A G T C A A G C T A G T C C G T A C T G A A G T C T A C G T C A G G C A T T A C G