Information for 4-GTTCTGCCAA (Motif 6)

C T A G A C G T A G C T A G T C C G A T A C T G G A T C G T A C G T C A C G T A
Reverse Opposite:
A C G T A C G T A C T G C T A G G T A C C G T A C T A G C T G A T G C A G A T C
p-value:1e-10
log p-value:-2.467e+01
Information Content per bp:1.836
Number of Target Sequences with motif19.0
Percentage of Target Sequences with motif2.18%
Number of Background Sequences with motif135.3
Percentage of Background Sequences with motif0.28%
Average Position of motif in Targets62.6 +/- 28.5bp
Average Position of motif in Background46.5 +/- 29.9bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIA/MA0670.1/Jaspar

Match Rank:1
Score:0.77
Offset:2
Orientation:forward strand
Alignment:GTTCTGCCAA--
--GGTGCCAAGT
 C T A G A C G T A G C T A G T C C G A T A C T G G A T C G T A C G T C A C G T A A C G T A C G T
A C G T A C G T T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:2
Score:0.74
Offset:3
Orientation:forward strand
Alignment:GTTCTGCCAA-
---TTGCCAAG
 C T A G A C G T A G C T A G T C C G A T A C T G G A T C G T A C G T C A C G T A A C G T
A C G T A C G T A C G T A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G

NFIC/MA0161.1/Jaspar

Match Rank:3
Score:0.73
Offset:4
Orientation:reverse strand
Alignment:GTTCTGCCAA
----TGCCAA
 C T A G A C G T A G C T A G T C C G A T A C T G G A T C G T A C G T C A C G T A
A C G T A C G T A C G T A C G T G C A T C A T G G A T C A G T C G T C A C T G A

NFIX/MA0671.1/Jaspar

Match Rank:4
Score:0.72
Offset:2
Orientation:forward strand
Alignment:GTTCTGCCAA-
--CGTGCCAAG
 C T A G A C G T A G C T A G T C C G A T A C T G G A T C G T A C G T C A C G T A A C G T
A C G T A C G T T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G

MEIS2/MA0774.1/Jaspar

Match Rank:5
Score:0.67
Offset:2
Orientation:reverse strand
Alignment:GTTCTGCCAA
--GCTGTCAA
 C T A G A C G T A G C T A G T C C G A T A C T G G A T C G T A C G T C A C G T A
A C G T A C G T A T C G A T G C A C G T C A T G G C A T A G T C G T C A G C T A

Hic1/MA0739.1/Jaspar

Match Rank:6
Score:0.65
Offset:3
Orientation:forward strand
Alignment:GTTCTGCCAA--
---ATGCCAACC
 C T A G A C G T A G C T A G T C C G A T A C T G G A T C G T A C G T C A C G T A A C G T A C G T
A C G T A C G T A C G T T C G A A G C T T C A G T A G C G T A C G T C A T C G A A T G C A G T C

MEIS3/MA0775.1/Jaspar

Match Rank:7
Score:0.64
Offset:2
Orientation:reverse strand
Alignment:GTTCTGCCAA
--CCTGTCAA
 C T A G A C G T A G C T A G T C C G A T A C T G G A T C G T A C G T C A C G T A
A C G T A C G T T A G C T G A C G A C T C T A G G A C T A T G C C G T A G C T A

Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer

Match Rank:8
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:GTTCTGCCAA
--RHTGWCAR
 C T A G A C G T A G C T A G T C C G A T A C T G G A T C G T A C G T C A C G T A
A C G T A C G T C T A G G T A C A G C T C T A G G C T A G A T C C G T A C T G A

PB0029.1_Hic1_1/Jaspar

Match Rank:9
Score:0.62
Offset:0
Orientation:forward strand
Alignment:GTTCTGCCAA------
ACTATGCCAACCTACC
 C T A G A C G T A G C T A G T C C G A T A C T G G A T C G T A C G T C A C G T A A C G T A C G T A C G T A C G T A C G T A C G T
C G T A A G T C A C G T C T G A A C G T C T A G A T G C A G T C G T C A T G C A A G T C A G T C G C A T C T G A G A T C G A T C

Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer

Match Rank:10
Score:0.62
Offset:4
Orientation:forward strand
Alignment:GTTCTGCCAA--
----TGTCANYT
 C T A G A C G T A G C T A G T C C G A T A C T G G A T C G T A C G T C A C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A G C T C A T G G C A T G A T C T G C A C T A G G A T C A C G T