Information for 15-CACGCGTGACBTC (Motif 21)

G T A C C G T A A G T C A C T G A T G C A C T G A C G T A C T G G T C A A G T C A C T G A C G T A G T C
Reverse Opposite:
A C T G T G C A T A G C A C T G A C G T A G T C G T C A G T A C A T C G A G T C A C T G A C G T A C T G
p-value:1e-6
log p-value:-1.519e+01
Information Content per bp:1.844
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.57%
Number of Background Sequences with motif7.7
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets37.6 +/- 10.8bp
Average Position of motif in Background69.2 +/- 42.9bp
Strand Bias (log2 ratio + to - strand density)-1.3
Multiplicity (# of sites on avg that occur together)1.20
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PAX9/MA0781.1/Jaspar

Match Rank:1
Score:0.68
Offset:-3
Orientation:forward strand
Alignment:---CACGCGTGACBTC-
CGTCACGCATGACTGCA
 A C G T A C G T A C G T G T A C C G T A A G T C A C T G A T G C A C T G A C G T A C T G G T C A A G T C A C T G A C G T A G T C A C G T
A T G C A C T G G C A T A G T C T G C A A G T C A C T G A T G C G C T A G A C T A T C G C T G A T A G C G A C T C A T G T G A C G T C A

PAX1/MA0779.1/Jaspar

Match Rank:2
Score:0.68
Offset:-3
Orientation:forward strand
Alignment:---CACGCGTGACBTC-
CGTCACGCATGACTGCA
 A C G T A C G T A C G T G T A C C G T A A G T C A C T G A T G C A C T G A C G T A C T G G T C A A G T C A C T G A C G T A G T C A C G T
A T G C C A T G G C A T G A T C T G C A G A T C C A T G A T G C G C T A G A C T A T C G T C G A T A G C G A C T C A T G T G A C G T C A

Pax6/MA0069.1/Jaspar

Match Rank:3
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--CACGCGTGACBTC
TTCACGCATGAGTT-
 A C G T A C G T G T A C C G T A A G T C A C T G A T G C A C T G A C G T A C T G G T C A A G T C A C T G A C G T A G T C
A C G T G A C T G A T C G T C A G A T C C A T G A T G C C G T A A G C T A T C G C T G A T A C G A G C T C A G T A C G T

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:4
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--CACGCGTGACBTC
GTCATGCHTGRCTGS
 A C G T A C G T G T A C C G T A A G T C A C T G A T G C A C T G A C G T A C T G G T C A A G T C A C T G A C G T A G T C
A C T G A G C T A G T C G T C A A G C T T C A G A T G C G A T C G C A T A T C G T C G A T A G C C G A T C A T G T A G C

Hes1/MA1099.1/Jaspar

Match Rank:5
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--CACGCGTGACBTC
GGCACGCGTC-----
 A C G T A C G T G T A C C G T A A G T C A C T G A T G C A C T G A C G T A C T G G T C A A G T C A C T G A C G T A G T C
T A C G T A C G G A T C C T G A A G T C T C A G G A T C A C T G G A C T G T A C A C G T A C G T A C G T A C G T A C G T

Ahr::Arnt/MA0006.1/Jaspar

Match Rank:6
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:CACGCGTGACBTC
CACGCA-------
 G T A C C G T A A G T C A C T G A T G C A C T G A C G T A C T G G T C A A G T C A C T G A C G T A G T C
A G T C C G T A G T A C C T A G G T A C C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:7
Score:0.64
Offset:-3
Orientation:reverse strand
Alignment:---CACGCGTGACBTC
NGTCACGCTTGGCTGC
 A C G T A C G T A C G T G T A C C G T A A G T C A C T G A T G C A C T G A C G T A C T G G T C A A G T C A C T G A C G T A G T C
C T A G A C T G A G C T A G T C G T C A G A T C T C A G A T G C G C A T G A C T A T C G T C A G T A G C G A C T C T A G T G A C

Mitf/MA0620.1/Jaspar

Match Rank:8
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:CACGCGTGACBTC
-NCACGTGACN--
 G T A C C G T A A G T C A C T G A T G C A C T G A C G T A C T G G T C A A G T C A C T G A C G T A G T C
A C G T A G T C G T A C C G T A A G T C T C A G C A G T A C T G T G C A A G T C G A T C A C G T A C G T

NR2F1/MA0017.2/Jaspar

Match Rank:9
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:CACGCGTGACBTC--
--CNNTTGACCTTTG
 G T A C C G T A A G T C A C T G A T G C A C T G A C G T A C T G G T C A A G T C A C T G A C G T A G T C A C G T A C G T
A C G T A C G T G A T C A G T C A G T C C A G T A G C T A C T G C G T A A G T C A T G C A G C T G A C T C G A T C A T G

Arntl/MA0603.1/Jaspar

Match Rank:10
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:CACGCGTGACBTC
-NCACGTGACN--
 G T A C C G T A A G T C A C T G A T G C A C T G A C G T A C T G G T C A A G T C A C T G A C G T A G T C
A C G T C T A G G T A C C T G A A G T C T C A G C G A T A C T G G T C A A G T C G T A C A C G T A C G T