Information for 9-TGACAAAGAT (Motif 18)

A C G T C T A G T C G A A T G C C G T A G T C A C G T A A C T G T G C A A C G T
Reverse Opposite:
G T C A A C G T T G A C C G A T A C G T A C G T A T C G A G C T A G T C C G T A
p-value:1e-8
log p-value:-1.865e+01
Information Content per bp:1.842
Number of Target Sequences with motif14.0
Percentage of Target Sequences with motif1.61%
Number of Background Sequences with motif99.7
Percentage of Background Sequences with motif0.21%
Average Position of motif in Targets50.7 +/- 29.1bp
Average Position of motif in Background52.1 +/- 27.1bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SOX10/MA0442.1/Jaspar

Match Rank:1
Score:0.73
Offset:2
Orientation:reverse strand
Alignment:TGACAAAGAT
--ACAAAG--
 A C G T C T A G T C G A A T G C C G T A G T C A C G T A A C T G T G C A A C G T
A C G T A C G T G T C A A T G C C G T A T G C A C G T A C T A G A C G T A C G T

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:2
Score:0.72
Offset:-1
Orientation:reverse strand
Alignment:-TGACAAAGAT
VRRACAAWGG-
 A C G T A C G T C T A G T C G A A T G C C G T A G T C A C G T A A C T G T G C A A C G T
T A G C C T A G T C G A C G T A A G T C C G T A C T G A C G T A C T A G T A C G A C G T

MEIS1/MA0498.2/Jaspar

Match Rank:3
Score:0.72
Offset:-1
Orientation:forward strand
Alignment:-TGACAAAGAT
TTGACAG----
 A C G T A C G T C T A G T C G A A T G C C G T A G T C A C G T A A C T G T G C A A C G T
G C A T G C A T A T C G T G C A A G T C C T G A C T A G A C G T A C G T A C G T A C G T

Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer

Match Rank:4
Score:0.71
Offset:-2
Orientation:reverse strand
Alignment:--TGACAAAGAT
RHTGWCAR----
 A C G T A C G T A C G T C T A G T C G A A T G C C G T A G T C A C G T A A C T G T G C A A C G T
C T A G G T A C A G C T C T A G G C T A G A T C C G T A C T G A A C G T A C G T A C G T A C G T

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:5
Score:0.69
Offset:1
Orientation:reverse strand
Alignment:TGACAAAGAT
-RACAAWGG-
 A C G T C T A G T C G A A T G C C G T A G T C A C G T A A C T G T G C A A C G T
A C G T T C G A G T C A T G A C C G T A C G T A C G T A C T A G T A C G A C G T

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:6
Score:0.69
Offset:-1
Orientation:reverse strand
Alignment:-TGACAAAGAT
GGAACAAAGR-
 A C G T A C G T C T A G T C G A A T G C C G T A G T C A C G T A A C T G T G C A A C G T
T C A G T C A G T C G A C G T A A G T C C G T A C G T A C G T A A C T G T C A G A C G T

Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer

Match Rank:7
Score:0.68
Offset:-3
Orientation:reverse strand
Alignment:---TGACAAAGAT
ARNTGACA-----
 A C G T A C G T A C G T A C G T C T A G T C G A A T G C C G T A G T C A C G T A A C T G T G C A A C G T
T G C A C T A G G A T C A C G T C T A G C G T A G T A C T C G A A C G T A C G T A C G T A C G T A C G T

Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer

Match Rank:8
Score:0.66
Offset:2
Orientation:reverse strand
Alignment:TGACAAAGAT----
--ACAAAGGNBCCT
 A C G T C T A G T C G A A T G C C G T A G T C A C G T A A C T G T G C A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T G C T A T A G C C G T A T C G A C G T A T C A G T A C G T C A G A G T C A G T C G A T C G C A T

PB0166.1_Sox12_2/Jaspar

Match Rank:9
Score:0.66
Offset:-4
Orientation:forward strand
Alignment:----TGACAAAGAT--
AAACAGACAAAGGAAT
 A C G T A C G T A C G T A C G T A C G T C T A G T C G A A T G C C G T A G T C A C G T A A C T G T G C A A C G T A C G T A C G T
T G C A T G C A C G T A A G C T C T G A A T C G C G T A A G T C G C T A T C G A G C T A T A C G T C A G T G C A C G T A G A C T

Sox3/MA0514.1/Jaspar

Match Rank:10
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-TGACAAAGAT
AAAACAAAGG-
 A C G T A C G T C T A G T C G A A T G C C G T A G T C A C G T A A C T G T G C A A C G T
T C G A T C G A T C G A C G T A A T G C C G T A C G T A C G T A C T A G T A C G A C G T