Information for 12-CATTAAATCAMAC (Motif 17)

G T A C G T C A A C G T A C G T C G T A C T G A C G T A C G A T A G T C G T C A G T C A C G T A A G T C
Reverse Opposite:
C T A G G A C T C A G T C A G T C T A G C G T A A C G T A G C T A C G T T C G A G T C A A C G T A C T G
p-value:1e-8
log p-value:-1.921e+01
Information Content per bp:1.736
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.46%
Number of Background Sequences with motif1.9
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets45.5 +/- 32.3bp
Average Position of motif in Background32.9 +/- 12.4bp
Strand Bias (log2 ratio + to - strand density)-1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hoxc9/MA0485.1/Jaspar

Match Rank:1
Score:0.74
Offset:-2
Orientation:forward strand
Alignment:--CATTAAATCAMAC
GGCCATAAATCAC--
 A C G T A C G T G T A C G T C A A C G T A C G T C G T A C T G A C G T A C G A T A G T C G T C A G T C A C G T A A G T C
C T A G T A C G G A T C G T A C C T G A A G C T T G C A C G T A G T C A C G A T G A T C G C T A A G T C A C G T A C G T

Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer

Match Rank:2
Score:0.72
Offset:-2
Orientation:forward strand
Alignment:--CATTAAATCAMAC
GGCCATAAATCA---
 A C G T A C G T G T A C G T C A A C G T A C G T C G T A C T G A C G T A C G A T A G T C G T C A G T C A C G T A A G T C
C T A G T A C G G A T C G T A C C T G A A G C T T G C A G C T A C G T A G C A T G A T C G C T A A C G T A C G T A C G T

Arid3a/MA0151.1/Jaspar

Match Rank:3
Score:0.70
Offset:1
Orientation:forward strand
Alignment:CATTAAATCAMAC
-ATTAAA------
 G T A C G T C A A C G T A C G T C G T A C T G A C G T A C G A T A G T C G T C A G T C A C G T A A G T C
A C G T C G T A A C G T G A C T C G T A C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T

Hoxa9/MA0594.1/Jaspar

Match Rank:4
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-CATTAAATCAMAC
GCCATAAATCA---
 A C G T G T A C G T C A A C G T A C G T C G T A C T G A C G T A C G A T A G T C G T C A G T C A C G T A A G T C
T A C G G A T C G T A C T C G A A C G T T G C A G C T A G T C A C G A T G A T C G C T A A C G T A C G T A C G T

Gfi1/MA0038.1/Jaspar

Match Rank:5
Score:0.68
Offset:3
Orientation:forward strand
Alignment:CATTAAATCAMAC
---CAAATCACTG
 G T A C G T C A A C G T A C G T C G T A C T G A C G T A C G A T A G T C G T C A G T C A C G T A A G T C
A C G T A C G T A C G T A G T C T G C A C G T A C G T A C A G T G T A C G C T A T A G C G C A T T A C G

PH0056.1_Hoxa9/Jaspar

Match Rank:6
Score:0.68
Offset:-5
Orientation:forward strand
Alignment:-----CATTAAATCAMAC
ACGGCCATAAAATTAAT-
 A C G T A C G T A C G T A C G T A C G T G T A C G T C A A C G T A C G T C G T A C T G A C G T A C G A T A G T C G T C A G T C A C G T A A G T C
C T G A T G A C C T A G A T C G G A T C G T A C C T G A C G A T G C T A C G T A C G T A C G T A G C A T C A G T C G T A C T G A C G A T A C G T

HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer

Match Rank:7
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--CATTAAATCAMAC
GGCCATAAATCA---
 A C G T A C G T G T A C G T C A A C G T A C G T C G T A C T G A C G T A C G A T A G T C G T C A G T C A C G T A A G T C
C T A G T A C G A G T C G T A C T C G A A C G T G T C A G C T A G C T A C G A T A G T C G C T A A C G T A C G T A C G T

PH0064.1_Hoxb9/Jaspar

Match Rank:8
Score:0.64
Offset:-5
Orientation:forward strand
Alignment:-----CATTAAATCAMAC
AGAGCCATAAAATTCG--
 A C G T A C G T A C G T A C G T A C G T G T A C G T C A A C G T A C G T C G T A C T G A C G T A C G A T A G T C G T C A G T C A C G T A A G T C
T C A G T C A G T C G A A T C G G A T C G T A C C T G A G A C T C G T A C G T A C G T A C G T A G C A T G A C T G T A C C T A G A C G T A C G T

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:9
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--CATTAAATCAMAC
NGYCATAAAWCH---
 A C G T A C G T G T A C G T C A A C G T A C G T C G T A C T G A C G T A C G A T A G T C G T C A G T C A C G T A A G T C
T A C G T C A G G A T C G T A C T C G A G A C T G C T A G C T A G C T A C G T A G A T C G T C A A C G T A C G T A C G T

Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer

Match Rank:10
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---CATTAAATCAMAC
NGCAATTAAA------
 A C G T A C G T A C G T G T A C G T C A A C G T A C G T C G T A C T G A C G T A C G A T A G T C G T C A G T C A C G T A A G T C
T A C G A T C G G A T C G T C A C T G A G C A T C G A T G C T A T C G A G C T A A C G T A C G T A C G T A C G T A C G T A C G T