Information for 20-GTTGTCATTGGCT (Motif 19)

C T A G A C G T A G C T C A T G A C G T A G T C G C T A A C G T C G A T T A C G C A T G A T G C C G A T
Reverse Opposite:
C G T A A T C G G T A C A G T C G C T A G T C A C G A T C T A G G T C A G T A C T C G A G T C A G A T C
p-value:1e-9
log p-value:-2.175e+01
Information Content per bp:1.670
Number of Target Sequences with motif25.0
Percentage of Target Sequences with motif3.36%
Number of Background Sequences with motif331.4
Percentage of Background Sequences with motif0.71%
Average Position of motif in Targets50.4 +/- 26.5bp
Average Position of motif in Background51.9 +/- 32.7bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL004.1_CCAAT-box/Jaspar

Match Rank:1
Score:0.69
Offset:4
Orientation:reverse strand
Alignment:GTTGTCATTGGCT---
----TGATTGGCTANN
 C T A G A C G T A G C T C A T G A C G T A G T C G C T A A C G T C G A T T A C G C A T G A T G C C G A T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A G C T A T C G G C T A G C A T A C G T C T A G T A C G G A T C G A C T C T G A T C A G C A G T

NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer

Match Rank:2
Score:0.68
Offset:-3
Orientation:forward strand
Alignment:---GTTGTCATTGGCT
NNTGTTTATTTTGGCA
 A C G T A C G T A C G T C T A G A C G T A G C T C A T G A C G T A G T C G C T A A C G T C G A T T A C G C A T G A T G C C G A T
C G A T G A C T C G A T T C A G G A C T A C G T C A G T C T G A G A C T G A C T A G C T C G A T A C T G A T C G G T A C G C T A

NFY(CCAAT)/Promoter/Homer

Match Rank:3
Score:0.65
Offset:3
Orientation:reverse strand
Alignment:GTTGTCATTGGCT
---CCGATTGGCT
 C T A G A C G T A G C T C A T G A C G T A G T C G C T A A C G T C G A T T A C G C A T G A T G C C G A T
A C G T A C G T A C G T A T G C A G T C A T C G C G T A A C G T A C G T A C T G A C T G G A T C A G C T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:4
Score:0.60
Offset:7
Orientation:forward strand
Alignment:GTTGTCATTGGCT--
-------TWGTCTGV
 C T A G A C G T A G C T C A T G A C G T A G T C G C T A A C G T C G A T T A C G C A T G A T G C C G A T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G

NFYB/MA0502.1/Jaspar

Match Rank:5
Score:0.59
Offset:3
Orientation:reverse strand
Alignment:GTTGTCATTGGCT-----
---CTGATTGGTCNATTT
 C T A G A C G T A G C T C A T G A C G T A G T C G C T A A C G T C G A T T A C G C A T G A T G C C G A T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A T G C A G C T A T C G C G T A A G C T A C G T A C T G A C T G G A C T A G T C T A G C T C G A C A G T C A G T A G C T

NFIC/MA0161.1/Jaspar

Match Rank:6
Score:0.59
Offset:7
Orientation:forward strand
Alignment:GTTGTCATTGGCT
-------TTGGCA
 C T A G A C G T A G C T C A T G A C G T A G T C G C T A A C G T C G A T T A C G C A T G A T G C C G A T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A C T C A G T T C A G C T A G G T A C C G T A

PB0122.1_Foxk1_2/Jaspar

Match Rank:7
Score:0.59
Offset:-4
Orientation:reverse strand
Alignment:----GTTGTCATTGGCT
NNNTGTTGTTGTTNG--
 A C G T A C G T A C G T A C G T C T A G A C G T A G C T C A T G A C G T A G T C G C T A A C G T C G A T T A C G C A T G A T G C C G A T
C T G A C A T G C T A G G C A T C T A G G C A T A C G T C T A G A G C T A C G T C T A G G A C T C A G T C G A T C A T G A C G T A C G T

PH0057.1_Hoxb13/Jaspar

Match Rank:8
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--GTTGTCATTGGCT-
NNAATTTTATTGGNTN
 A C G T A C G T C T A G A C G T A G C T C A T G A C G T A G T C G C T A A C G T C G A T T A C G C A T G A T G C C G A T A C G T
A T G C C T A G C G T A C G T A A C G T C G A T C G A T G C A T C T G A G A C T C A G T C T A G T A C G C A T G G A C T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:9
Score:0.59
Offset:6
Orientation:reverse strand
Alignment:GTTGTCATTGGCT--
------NTTGGCANN
 C T A G A C G T A G C T C A T G A C G T A G T C G C T A A C G T C G A T T A C G C A T G A T G C C G A T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G

Sox17/MA0078.1/Jaspar

Match Rank:10
Score:0.58
Offset:3
Orientation:forward strand
Alignment:GTTGTCATTGGCT
---CTCATTGTC-
 C T A G A C G T A G C T C A T G A C G T A G T C G C T A A C G T C G A T T A C G C A T G A T G C C G A T
A C G T A C G T A C G T G A C T G A C T G A T C C G T A A G C T A C G T A C T G A C G T A T G C A C G T