Information for 3-CTTGGGACTTAGTCAC (Motif 4)

A T G C A G C T C G A T C T A G A C T G C A T G C G T A T A G C A C G T A C G T T C G A C T A G C G A T G T A C C G T A A G T C
Reverse Opposite:
C T A G C G A T A C T G C G T A A G T C A G C T C G T A G T C A A T C G A C G T G A T C G T A C A G T C G C T A C T G A T A C G
p-value:1e-24
log p-value:-5.598e+01
Information Content per bp:1.704
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif1.24%
Number of Background Sequences with motif1.2
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets45.9 +/- 18.8bp
Average Position of motif in Background80.8 +/- 1.9bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer

Match Rank:1
Score:0.61
Offset:4
Orientation:reverse strand
Alignment:CTTGGGACTTAGTCAC---
----NNAATTAGTCACGGT
 A T G C A G C T C G A T C T A G A C T G C A T G C G T A T A G C A C G T A C G T T C G A C T A G C G A T G T A C C G T A A G T C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A G C T G A T C T C G A C G T A A C G T A G C T C G T A A C T G G A C T G A T C G T C A G A T C C T A G A T C G G C A T

PB0149.1_Myb_2/Jaspar

Match Rank:2
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-CTTGGGACTTAGTCAC
NNNTGGCAGTTGGTNN-
 A C G T A T G C A G C T C G A T C T A G A C T G C A T G C G T A T A G C A C G T A C G T T C G A C T A G C G A T G T A C C G T A A G T C
C T A G T A G C T C G A G A C T C T A G C T A G A G T C C T G A A C T G A C G T G A C T C T A G T C A G C A G T G T A C T A C G A C G T

Myb/MA0100.2/Jaspar

Match Rank:3
Score:0.54
Offset:2
Orientation:reverse strand
Alignment:CTTGGGACTTAGTCAC
--TGGCAGTTGN----
 A T G C A G C T C G A T C T A G A C T G C A T G C G T A T A G C A C G T A C G T T C G A C T A G C G A T G T A C C G T A A G T C
A C G T A C G T C G A T A C T G C T A G A G T C C G T A A C T G A G C T A C G T C T A G T C A G A C G T A C G T A C G T A C G T

NFIA/MA0670.1/Jaspar

Match Rank:4
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-CTTGGGACTTAGTCAC
NNTTGGCANN-------
 A C G T A T G C A G C T C G A T C T A G A C T G C A T G C G T A T A G C A C G T A C G T T C G A C T A G C G A T G T A C C G T A A G T C
G C T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A G T A C A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer

Match Rank:5
Score:0.54
Offset:1
Orientation:forward strand
Alignment:CTTGGGACTTAGTCAC
-TWGHWACAWTGTWDC
 A T G C A G C T C G A T C T A G A C T G C A T G C G T A T A G C A C G T A C G T T C G A C T A G C G A T G T A C C G T A A G T C
A C G T G C A T C G A T C T A G G C T A G C A T C G T A G A T C G C T A C G A T C G A T C T A G C G A T C G T A C G A T G A T C

PB0150.1_Mybl1_2/Jaspar

Match Rank:6
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:CTTGGGACTTAGTCAC
CACGGCAGTTGGTNN-
 A T G C A G C T C G A T C T A G A C T G C A T G C G T A T A G C A C G T A C G T T C G A C T A G C G A T G T A C C G T A A G T C
T G A C C G T A A G T C C A T G C T A G A G T C T C G A A C T G A C G T C A G T C T A G C T A G A C G T T A G C T A C G A C G T

DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer

Match Rank:7
Score:0.52
Offset:1
Orientation:forward strand
Alignment:CTTGGGACTTAGTCAC
-YDGHTACAWTGTADC
 A T G C A G C T C G A T C T A G A C T G C A T G C G T A T A G C A C G T A C G T T C G A C T A G C G A T G T A C C G T A A G T C
A C G T G A C T C G A T C A T G G C T A G C A T C G T A A G T C G C T A G C A T C G A T T A C G G C A T C G T A C A G T G A T C

Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer

Match Rank:8
Score:0.52
Offset:5
Orientation:forward strand
Alignment:CTTGGGACTTAGTCAC-
-----NNATGASTCATH
 A T G C A G C T C G A T C T A G A C T G C A T G C G T A T A G C A C G T A C G T T C G A C T A G C G A T G T A C C G T A A G T C A C G T
A C G T A C G T A C G T A C G T A C G T A C T G C T A G T C G A C G A T C A T G G C T A A T C G C G A T G T A C G C T A A G C T G T A C

HMBOX1/MA0895.1/Jaspar

Match Rank:9
Score:0.52
Offset:7
Orientation:forward strand
Alignment:CTTGGGACTTAGTCAC-
-------ACTAGTTAAC
 A T G C A G C T C G A T C T A G A C T G C A T G C G T A T A G C A C G T A C G T T C G A C T A G C G A T G T A C C G T A A G T C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T G C A A G T C C G A T C T G A A T C G C G A T G C A T C G T A G T C A T A G C

DUXA/MA0884.1/Jaspar

Match Rank:10
Score:0.52
Offset:3
Orientation:forward strand
Alignment:CTTGGGACTTAGTCAC
---CTAATTTAATCAA
 A T G C A G C T C G A T C T A G A C T G C A T G C G T A T A G C A C G T A C G T T C G A C T A G C G A T G T A C C G T A A G T C
A C G T A C G T A C G T G A T C G A C T C T G A T C G A G A C T A G C T A G C T T G C A C T G A A C G T A G T C C G T A C T G A