Information for 9-GAGAGATCACAAT (Motif 16)

A T C G C G T A A C T G C G T A A C T G G T C A A C G T A G T C C G T A A G T C C G T A C G T A A G C T
Reverse Opposite:
C T G A C G A T C G A T A C T G A C G T A C T G G T C A A C G T A G T C C G A T A G T C A C G T A T G C
p-value:1e-6
log p-value:-1.405e+01
Information Content per bp:1.844
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif0.37%
Number of Background Sequences with motif1.2
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets48.0 +/- 24.8bp
Average Position of motif in Background79.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)2.8
Multiplicity (# of sites on avg that occur together)2.67
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0099.1_Zfp691_1/Jaspar

Match Rank:1
Score:0.69
Offset:-4
Orientation:forward strand
Alignment:----GAGAGATCACAAT
CGAACAGTGCTCACTAT
 A C G T A C G T A C G T A C G T A T C G C G T A A C T G C G T A A C T G G T C A A C G T A G T C C G T A A G T C C G T A C G T A A G C T
A G T C C A T G G C T A T C G A G A T C T C G A A C T G C G A T C T A G G T A C A G C T A G T C T G C A A G T C G C A T C T G A C G A T

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:2
Score:0.63
Offset:1
Orientation:forward strand
Alignment:GAGAGATCACAAT
-AGRGGTCA----
 A T C G C G T A A C T G C G T A A C T G G T C A A C G T A G T C C G T A A G T C C G T A C G T A A G C T
A C G T T C G A T C A G T C G A A C T G C A T G A C G T A G T C C T G A A C G T A C G T A C G T A C G T

NR4A2/MA0160.1/Jaspar

Match Rank:3
Score:0.62
Offset:2
Orientation:forward strand
Alignment:GAGAGATCACAAT
--AAGGTCAC---
 A T C G C G T A A C T G C G T A A C T G G T C A A C G T A G T C C G T A A G T C C G T A C G T A A G C T
A C G T A C G T C T G A C T G A A C T G C T A G G A C T A G T C C G T A T G A C A C G T A C G T A C G T

PB0118.1_Esrra_2/Jaspar

Match Rank:4
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---GAGAGATCACAAT-
GGCGAGGGGTCAAGGGC
 A C G T A C G T A C G T A T C G C G T A A C T G C G T A A C T G G T C A A C G T A G T C C G T A A G T C C G T A C G T A A G C T A C G T
T A C G C A T G A T G C A C T G G C T A T A C G T C A G C A T G A C T G C G A T A G T C C T G A G C T A C T A G A T C G A T C G G T A C

PB0053.1_Rara_1/Jaspar

Match Rank:5
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---GAGAGATCACAAT
TCTCAAAGGTCACCTG
 A C G T A C G T A C G T A T C G C G T A A C T G C G T A A C T G G T C A A C G T A G T C C G T A A G T C C G T A C G T A A G C T
C A G T G T A C A G C T G T A C G C T A C T G A T C G A A C T G A C T G A C G T A G T C C T G A G A T C T A G C G A C T C A T G

PB0126.1_Gata5_2/Jaspar

Match Rank:6
Score:0.59
Offset:-4
Orientation:forward strand
Alignment:----GAGAGATCACAAT
GACAGAGATATCAGTGT
 A C G T A C G T A C G T A C G T A T C G C G T A A C T G C G T A A C T G G T C A A C G T A G T C C G T A A G T C C G T A C G T A A G C T
T C A G T G C A A G T C G T C A C T A G G T C A C A T G T C G A C A G T G T C A C A G T G A T C C G T A C T A G G A C T A C G T A C G T

PB0057.1_Rxra_1/Jaspar

Match Rank:7
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---GAGAGATCACAAT-
NTNNNGGGGTCANGNNN
 A C G T A C G T A C G T A T C G C G T A A C T G C G T A A C T G G T C A A C G T A G T C C G T A A G T C C G T A C G T A A G C T A C G T
T C G A C A G T A G C T C T G A G C T A T C A G C T A G A C T G A C T G A C G T A G T C C T G A G T A C T C A G C G T A T A G C G C T A

GATA2/MA0036.2/Jaspar

Match Rank:8
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:GAGAGATCACAAT--
-NCAGATAAGAANNN
 A T C G C G T A A C T G C G T A A C T G G T C A A C G T A G T C C G T A A G T C C G T A C G T A A G C T A C G T A C G T
A C G T C G T A T A G C C G T A A C T G C G T A A C G T C G T A C T G A T A C G T C G A C G T A G A C T G A T C G C A T

PB0049.1_Nr2f2_1/Jaspar

Match Rank:9
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---GAGAGATCACAAT
TCTCAAAGGTCACGAG
 A C G T A C G T A C G T A T C G C G T A A C T G C G T A A C T G G T C A A C G T A G T C C G T A A G T C C G T A C G T A A G C T
C A G T G T A C A C G T G T A C C G T A C T G A C T G A A C T G A C T G A C G T A G T C C T G A G T A C T A C G C G T A A C T G

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:10
Score:0.56
Offset:0
Orientation:forward strand
Alignment:GAGAGATCACAAT
CAAAGGTCAG---
 A T C G C G T A A C T G C G T A A C T G G T C A A C G T A G T C C G T A A G T C C G T A C G T A A G C T
A G T C T G C A T C G A C T G A A C T G C A T G A C G T A T G C G T C A T A C G A C G T A C G T A C G T