Information for 4-GAGTGCCATGGAC (Motif 6)

A C T G C G T A A C T G A G C T A C T G G T A C G T A C T G C A A G C T A C T G A C T G C G T A T A G C
Reverse Opposite:
A C T G A C G T A G T C A G T C T C G A A C G T A C T G A C T G A G T C C T G A A G T C A C G T A G T C
p-value:1e-10
log p-value:-2.489e+01
Information Content per bp:1.843
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.59%
Number of Background Sequences with motif1.4
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets34.2 +/- 23.0bp
Average Position of motif in Background25.4 +/- 5.1bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:1
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--GAGTGCCATGGAC
NTGATTGACAGN---
 A C G T A C G T A C T G C G T A A C T G A G C T A C T G G T A C G T A C T G C A A G C T A C T G A C T G C G T A T A G C
A C G T C G A T A T C G C G T A A C G T C A G T A C T G C T G A A G T C C T G A A T C G A T C G A C G T A C G T A C G T

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:2
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--GAGTGCCATGGAC
BTGABTGACAGS---
 A C G T A C G T A C T G C G T A A C T G A G C T A C T G G T A C G T A C T G C A A G C T A C T G A C T G C G T A T A G C
A C G T C G A T A C T G C G T A A C G T A C G T A C T G C T G A A G T C C T G A T A C G A T G C A C G T A C G T A C G T

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:3
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--GAGTGCCATGGAC
TTGAGTGSTT-----
 A C G T A C G T A C T G C G T A A C T G A G C T A C T G G T A C G T A C T G C A A G C T A C T G A C T G C G T A T A G C
G C A T A C G T C T A G C G T A C A T G C G A T C T A G A T C G G A C T G A C T A C G T A C G T A C G T A C G T A C G T

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:4
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---GAGTGCCATGGAC
CTTGAGTGGCT-----
 A C G T A C G T A C G T A C T G C G T A A C T G A G C T A C T G G T A C G T A C T G C A A G C T A C T G A C T G C G T A T A G C
A T G C G A C T C A G T C T A G C G T A A C T G C G A T A C T G A T C G G A T C G A C T A C G T A C G T A C G T A C G T A C G T

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:5
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---GAGTGCCATGGAC
CTYRAGTGSY------
 A C G T A C G T A C G T A C T G C G T A A C T G A G C T A C T G G T A C G T A C T G C A A G C T A C T G A C T G C G T A T A G C
A T G C G C A T A G C T C T A G C G T A A C T G C G A T C T A G A T G C G A T C A C G T A C G T A C G T A C G T A C G T A C G T

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:6
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--GAGTGCCATGGAC
TTRAGTGSYK-----
 A C G T A C G T A C T G C G T A A C T G A G C T A C T G G T A C G T A C T G C A A G C T A C T G A C T G C G T A T A G C
A G C T G A C T C T A G C G T A C A T G C G A T C T A G A T C G G A C T C A G T A C G T A C G T A C G T A C G T A C G T

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:7
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---GAGTGCCATGGAC
BTBRAGTGSN------
 A C G T A C G T A C G T A C T G C G T A A C T G A G C T A C T G G T A C G T A C T G C A A G C T A C T G A C T G C G T A T A G C
A T G C G A C T A G C T C T A G C G T A C T A G C G A T C T A G A T C G G A T C A C G T A C G T A C G T A C G T A C G T A C G T

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:8
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-GAGTGCCATGGAC
TGAGTGACAGSC--
 A C G T A C T G C G T A A C T G A G C T A C T G G T A C G T A C T G C A A G C T A C T G A C T G C G T A T A G C
C G A T A T C G T C G A A C T G C G A T A T C G C T G A A G T C C G T A A T C G T A C G G A T C A C G T A C G T

NKX2-8/MA0673.1/Jaspar

Match Rank:9
Score:0.54
Offset:-3
Orientation:reverse strand
Alignment:---GAGTGCCATGGAC
NTCAAGTGG-------
 A C G T A C G T A C G T A C T G C G T A A C T G A G C T A C T G G T A C G T A C T G C A A G C T A C T G A C T G C G T A T A G C
A G C T C G A T A T G C C T G A C T G A C T A G C A G T C T A G A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:10
Score:0.54
Offset:-2
Orientation:reverse strand
Alignment:--GAGTGCCATGGAC
TTAAGTGCTT-----
 A C G T A C G T A C T G C G T A A C T G A G C T A C T G G T A C G T A C T G C A A G C T A C T G A C T G C G T A T A G C
A C G T C A G T T C G A C G T A A C T G A C G T C T A G A T G C A G C T A G C T A C G T A C G T A C G T A C G T A C G T