Motif 16

Information for 14-GCGCGCGCGCGTG (Motif 16)

Reverse Opposite:

p-value:	1e-5
log p-value:	-1.352e+01
Information Content per bp:	1.652
Number of Target Sequences with motif	11.0
Percentage of Target Sequences with motif	1.38%
Number of Background Sequences with motif	100.7
Percentage of Background Sequences with motif	0.21%
Average Position of motif in Targets	53.3 +/- 14.4bp
Average Position of motif in Background	46.4 +/- 25.6bp
Strand Bias (log2 ratio + to - strand density)	-0.2
Multiplicity (# of sites on avg that occur together)	1.00
Motif File:	file (matrix) reverse opposite
SVG Files for Logos:	forward logo reverse opposite

Matches to Known Motifs

PB0095.1_Zfp161_1/Jaspar

Match Rank:	1
Score:	0.83
Offset:	-2
Orientation:	forward strand
Alignment:	--GCGCGCGCGCGTG- TGGCGCGCGCGCCTGA

NRF1/MA0506.1/Jaspar

Match Rank:	2
Score:	0.74
Offset:	0
Orientation:	forward strand
Alignment:	GCGCGCGCGCGTG GCGCCTGCGCA--

NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer

Match Rank:	3
Score:	0.68
Offset:	-2
Orientation:	forward strand
Alignment:	--GCGCGCGCGCGTG CTGCGCATGCGC---

PB0009.1_E2F3_1/Jaspar

Match Rank:	4
Score:	0.65
Offset:	-1
Orientation:	reverse strand
Alignment:	-GCGCGCGCGCGTG- ANCGCGCGCCCTTNN

PB0008.1_E2F2_1/Jaspar

Match Rank:	5
Score:	0.64
Offset:	-1
Orientation:	reverse strand
Alignment:	-GCGCGCGCGCGTG- NTCGCGCGCCTTNNN

NRF(NRF)/Promoter/Homer

Match Rank:	6
Score:	0.64
Offset:	0
Orientation:	reverse strand
Alignment:	GCGCGCGCGCGTG GCGCATGCGCAC-

Tcfl5/MA0632.1/Jaspar

Match Rank:	7
Score:	0.60
Offset:	5
Orientation:	forward strand
Alignment:	GCGCGCGCGCGTG-- -----GGCACGTGCC

Hes1/MA1099.1/Jaspar

Match Rank:	8
Score:	0.60
Offset:	5
Orientation:	reverse strand
Alignment:	GCGCGCGCGCGTG-- -----NNCGCGTGNN

EGR3/MA0732.1/Jaspar

Match Rank:	9
Score:	0.59
Offset:	-1
Orientation:	reverse strand
Alignment:	-GCGCGCGCGCGTG- ANTGCGTGGGCGTNN

EGR2/MA0472.2/Jaspar

Match Rank:	10
Score:	0.58
Offset:	-1
Orientation:	reverse strand
Alignment:	-GCGCGCGCGCGTG TGCGTGGGCGT---