Information for 4-CTTYCTGSCA (Motif 5)

G T A C A G C T C A G T A G C T A G T C G C A T A T C G A T G C G T A C G T C A
Reverse Opposite:
A C G T A C T G T A C G A T G C C G T A A C T G T C G A G T C A C T G A C A T G
p-value:1e-13
log p-value:-2.995e+01
Information Content per bp:1.659
Number of Target Sequences with motif154.0
Percentage of Target Sequences with motif19.13%
Number of Background Sequences with motif5017.5
Percentage of Background Sequences with motif10.38%
Average Position of motif in Targets50.7 +/- 26.3bp
Average Position of motif in Background49.8 +/- 30.7bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.07
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:1
Score:0.74
Offset:3
Orientation:reverse strand
Alignment:CTTYCTGSCA-
---CTTGGCAA
 G T A C A G C T C A G T A G C T A G T C G C A T A T C G A T G C G T A C G T C A A C G T
A C G T A C G T A C G T A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A

MEIS2/MA0774.1/Jaspar

Match Rank:2
Score:0.72
Offset:3
Orientation:reverse strand
Alignment:CTTYCTGSCA-
---GCTGTCAA
 G T A C A G C T C A G T A G C T A G T C G C A T A T C G A T G C G T A C G T C A A C G T
A C G T A C G T A C G T A T C G A T G C A C G T C A T G G C A T A G T C G T C A G C T A

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:3
Score:0.71
Offset:0
Orientation:forward strand
Alignment:CTTYCTGSCA---
CTGTCTGTCACCT
 G T A C A G C T C A G T A G C T A G T C G C A T A T C G A T G C G T A C G T C A A C G T A C G T A C G T
T A G C G C A T T C A G A C G T A G T C A C G T T A C G C A G T A T G C G C T A T A G C G A T C G A C T

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:4
Score:0.70
Offset:2
Orientation:forward strand
Alignment:CTTYCTGSCA--
--VGCTGWCAVB
 G T A C A G C T C A G T A G C T A G T C G C A T A T C G A T G C G T A C G T C A A C G T A C G T
A C G T A C G T T C A G T A C G T A G C A C G T A C T G C G A T A G T C C G T A T A C G A G T C

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:5
Score:0.69
Offset:1
Orientation:reverse strand
Alignment:CTTYCTGSCA---
-TGTCTGDCACCT
 G T A C A G C T C A G T A G C T A G T C G C A T A T C G A T G C G T A C G T C A A C G T A C G T A C G T
A C G T G C A T A C T G C G A T A G T C A C G T T A C G C A T G A G T C C G T A T A G C G A T C G A C T

Myb/MA0100.2/Jaspar

Match Rank:6
Score:0.68
Offset:0
Orientation:forward strand
Alignment:CTTYCTGSCA
CCAACTGCCA
 G T A C A G C T C A G T A G C T A G T C G C A T A T C G A T G C G T A C G T C A
A G T C G A T C C G T A C T G A A G T C C G A T A C T G G A T C G T A C G C T A

MEIS3/MA0775.1/Jaspar

Match Rank:7
Score:0.68
Offset:3
Orientation:reverse strand
Alignment:CTTYCTGSCA-
---CCTGTCAA
 G T A C A G C T C A G T A G C T A G T C G C A T A T C G A T G C G T A C G T C A A C G T
A C G T A C G T A C G T T A G C T G A C G A C T C T A G G A C T A T G C C G T A G C T A

NFIX/MA0671.1/Jaspar

Match Rank:8
Score:0.67
Offset:3
Orientation:forward strand
Alignment:CTTYCTGSCA--
---CGTGCCAAG
 G T A C A G C T C A G T A G C T A G T C G C A T A T C G A T G C G T A C G T C A A C G T A C G T
A C G T A C G T A C G T T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G

NFIC/MA0161.1/Jaspar

Match Rank:9
Score:0.67
Offset:5
Orientation:reverse strand
Alignment:CTTYCTGSCA-
-----TGCCAA
 G T A C A G C T C A G T A G C T A G T C G C A T A T C G A T G C G T A C G T C A A C G T
A C G T A C G T A C G T A C G T A C G T G C A T C A T G G A T C A G T C G T C A C T G A

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:10
Score:0.66
Offset:1
Orientation:forward strand
Alignment:CTTYCTGSCA-
-GGTCTGGCAT
 G T A C A G C T C A G T A G C T A G T C G C A T A T C G A T G C G T A C G T C A A C G T
A C G T A T C G C T A G G A C T A G T C A C G T A C T G A T C G G T A C C G T A C G A T