Information for 21-MTMMTAARRCTTAKGA (Motif 35)

T G A C A C G T G T A C G T C A A C G T C G T A C G T A T C A G C T A G A G T C A C G T A C G T C G T A A C T G A C T G C G T A
Reverse Opposite:
A C G T A G T C G T A C A C G T C G T A C G T A A C T G A G C T A G T C A C G T A C G T C G T A A C G T A C T G C G T A A C G T
p-value:1e-4
log p-value:-1.007e+01
Information Content per bp:1.839
Number of Target Sequences with motif2.0
Percentage of Target Sequences with motif0.47%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets40.0 +/- 14.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0068.1_Hoxc13/Jaspar

Match Rank:1
Score:0.54
Offset:-4
Orientation:forward strand
Alignment:----MTMMTAARRCTTAKGA
AAAGCTCGTAAAATTT----
 A C G T A C G T A C G T A C G T T G A C A C G T G T A C G T C A A C G T C G T A C G T A T C A G C T A G A G T C A C G T A C G T C G T A A C T G A C T G C G T A
G C A T G C T A C G T A A C T G T A G C A G C T G A T C C T A G A G C T C G T A C G T A C G T A G C T A G C A T A G C T C G A T A C G T A C G T A C G T A C G T

PH0075.1_Hoxd10/Jaspar

Match Rank:2
Score:0.53
Offset:-3
Orientation:forward strand
Alignment:---MTMMTAARRCTTAKGA
AATGCAATAAAATTTAT--
 A C G T A C G T A C G T T G A C A C G T G T A C G T C A A C G T C G T A C G T A T C A G C T A G A G T C A C G T A C G T C G T A A C T G A C T G C G T A
T G C A C T G A A C G T T C A G G A T C G T C A C G T A A G C T C G T A C G T A C G T A T C G A G A C T C G A T C G A T C G T A G C A T A C G T A C G T

Nr2e3/MA0164.1/Jaspar

Match Rank:3
Score:0.53
Offset:6
Orientation:reverse strand
Alignment:MTMMTAARRCTTAKGA
------AAGCTTG---
 T G A C A C G T G T A C G T C A A C G T C G T A C G T A T C A G C T A G A G T C A C G T A C G T C G T A A C T G A C T G C G T A
A C G T A C G T A C G T A C G T A C G T A C G T C G T A C G T A A C T G A T G C A C G T A C G T C T A G A C G T A C G T A C G T

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:4
Score:0.52
Offset:-1
Orientation:forward strand
Alignment:-MTMMTAARRCTTAKGA
NGYCATAAAWCH-----
 A C G T T G A C A C G T G T A C G T C A A C G T C G T A C G T A T C A G C T A G A G T C A C G T A C G T C G T A A C T G A C T G C G T A
T A C G T C A G G A T C G T A C T C G A G A C T G C T A G C T A G C T A C G T A G A T C G T C A A C G T A C G T A C G T A C G T A C G T

Hoxa11/MA0911.1/Jaspar

Match Rank:5
Score:0.52
Offset:-1
Orientation:forward strand
Alignment:-MTMMTAARRCTTAKGA
GGTCGTAAAATT-----
 A C G T T G A C A C G T G T A C G T C A A C G T C G T A C G T A T C A G C T A G A G T C A C G T A C G T C G T A A C T G A C T G C G T A
C T A G T C A G A G C T G A T C C T A G C G A T C G T A C G T A G C T A G C T A G C A T C G A T A C G T A C G T A C G T A C G T A C G T

PH0046.1_Hoxa10/Jaspar

Match Rank:6
Score:0.52
Offset:-3
Orientation:forward strand
Alignment:---MTMMTAARRCTTAKGA
TAGGTAATAAAATTCA---
 A C G T A C G T A C G T T G A C A C G T G T A C G T C A A C G T C G T A C G T A T C A G C T A G A G T C A C G T A C G T C G T A A C T G A C T G C G T A
C A G T G T C A A C T G T C A G G A C T G T C A C T G A G C A T C G T A C G T A G C T A G C T A G C A T C A G T G T A C C G T A A C G T A C G T A C G T

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:7
Score:0.52
Offset:0
Orientation:forward strand
Alignment:MTMMTAARRCTTAKGA
GTCATAAAAN------
 T G A C A C G T G T A C G T C A A C G T C G T A C G T A T C A G C T A G A G T C A C G T A C G T C G T A A C T G A C T G C G T A
T C A G A G C T G T A C C G T A A C G T C G T A C G T A C G T A G C T A G A C T A C G T A C G T A C G T A C G T A C G T A C G T

PH0013.1_Cdx2/Jaspar

Match Rank:8
Score:0.52
Offset:-4
Orientation:forward strand
Alignment:----MTMMTAARRCTTAKGA
AAAGGTAATAAAATTT----
 A C G T A C G T A C G T A C G T T G A C A C G T G T A C G T C A A C G T C G T A C G T A T C A G C T A G A G T C A C G T A C G T C G T A A C T G A C T G C G T A
C G T A T C G A T A C G C T A G T C A G A G C T G T C A C T G A C G A T C G T A C G T A G C T A G C T A G A C T C A G T G A C T A C G T A C G T A C G T A C G T

PH0048.1_Hoxa13/Jaspar

Match Rank:9
Score:0.51
Offset:-4
Orientation:forward strand
Alignment:----MTMMTAARRCTTAKGA
AAACCTCGTAAAATTT----
 A C G T A C G T A C G T A C G T T G A C A C G T G T A C G T C A A C G T C G T A C G T A T C A G C T A G A G T C A C G T A C G T C G T A A C T G A C T G C G T A
G C T A C G T A G C T A A T C G T A G C A G C T G A T C C T A G A G C T C G T A C G T A G C T A G C T A G C A T A C G T C G A T A C G T A C G T A C G T A C G T

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:10
Score:0.51
Offset:-1
Orientation:forward strand
Alignment:-MTMMTAARRCTTAKGA
NCYAATAAAA-------
 A C G T T G A C A C G T G T A C G T C A A C G T C G T A C G T A T C A G C T A G A G T C A C G T A C G T C G T A A C T G A C T G C G T A
C G A T T A G C G A C T G T C A C G T A A C G T C G T A C G T A C G T A G C T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T