Information for 16-TGSCACTKRGGTM (Motif 29)

A C G T A C T G A T C G A G T C C T G A A G T C A C G T A C T G C T A G A C T G A C T G A C G T G T C A
Reverse Opposite:
A C G T C G T A A G T C A G T C A G T C G T A C C G T A A C T G A G C T A C T G A T G C A G T C C G T A
p-value:1e-6
log p-value:-1.585e+01
Information Content per bp:1.875
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif0.71%
Number of Background Sequences with motif0.9
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets32.0 +/- 20.2bp
Average Position of motif in Background64.1 +/- 17.5bp
Strand Bias (log2 ratio + to - strand density)2.3
Multiplicity (# of sites on avg that occur together)2.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NKX2-3/MA0672.1/Jaspar

Match Rank:1
Score:0.59
Offset:1
Orientation:forward strand
Alignment:TGSCACTKRGGTM
-ACCACTTGAA--
 A C G T A C T G A T C G A G T C C T G A A G T C A C G T A C T G C T A G A C T G A C T G A C G T G T C A
A C G T T G C A T A G C G A T C G C T A G T A C A C G T A G C T T C A G C G T A T C G A A C G T A C G T

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:2
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:TGSCACTKRGGTM
MRSCACTYAA---
 A C G T A C T G A T C G A G T C C T G A A G T C A C G T A C T G C T A G A C T G A C T G A C G T G T C A
G T C A C T G A T A G C A G T C C G T A G T A C G C A T A G T C C T G A T C G A A C G T A C G T A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:3
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--TGSCACTKRGGTM
CTTGGCAA-------
 A C G T A C G T A C G T A C T G A T C G A G T C C T G A A G T C A C G T A C T G C T A G A C T G A C T G A C G T G T C A
A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:4
Score:0.58
Offset:1
Orientation:forward strand
Alignment:TGSCACTKRGGTM
-RSCACTYRAG--
 A C G T A C T G A T C G A G T C C T G A A G T C A C G T A C T G C T A G A C T G A C T G A C G T G T C A
A C G T C T A G T A C G A G T C C G T A A G T C A C G T A G T C T C G A C G T A T A C G A C G T A C G T

NKX3-2/MA0122.2/Jaspar

Match Rank:5
Score:0.58
Offset:1
Orientation:forward strand
Alignment:TGSCACTKRGGTM
-ACCACTTAA---
 A C G T A C T G A T C G A G T C C T G A A G T C A C G T A C T G C T A G A C T G A C T G A C G T G T C A
A C G T T C G A T A G C G A T C G C T A G T A C A G C T G A C T G C T A C T G A A C G T A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:6
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--TGSCACTKRGGTM
NTTGGCANN------
 A C G T A C G T A C G T A C T G A T C G A G T C C T G A A G T C A C G T A C T G C T A G A C T G A C T G A C G T G T C A
A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G A C G T A C G T A C G T A C G T A C G T A C G T

Myb/MA0100.2/Jaspar

Match Rank:7
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:TGSCACTKRGGTM
TGGCAGTTGN---
 A C G T A C T G A T C G A G T C C T G A A G T C A C G T A C T G C T A G A C T G A C T G A C G T G T C A
C G A T A C T G C T A G A G T C C G T A A C T G A G C T A C G T C T A G T C A G A C G T A C G T A C G T

Nkx3-1/MA0124.2/Jaspar

Match Rank:8
Score:0.57
Offset:1
Orientation:forward strand
Alignment:TGSCACTKRGGTM
-ACCACTTAA---
 A C G T A C T G A T C G A G T C C T G A A G T C A C G T A C T G C T A G A C T G A C T G A C G T G T C A
A C G T T C G A T A G C A G T C G C T A G T A C A G C T A G C T G C T A C T G A A C G T A C G T A C G T

NFIA/MA0670.1/Jaspar

Match Rank:9
Score:0.57
Offset:-3
Orientation:reverse strand
Alignment:---TGSCACTKRGGTM
NNTTGGCANN------
 A C G T A C G T A C G T A C G T A C T G A T C G A G T C C T G A A G T C A C G T A C T G C T A G A C T G A C T G A C G T G T C A
G C T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A G T A C A G T C A C G T A C G T A C G T A C G T A C G T A C G T

PB0149.1_Myb_2/Jaspar

Match Rank:10
Score:0.56
Offset:-3
Orientation:reverse strand
Alignment:---TGSCACTKRGGTM
NNNTGGCAGTTGGTNN
 A C G T A C G T A C G T A C G T A C T G A T C G A G T C C T G A A G T C A C G T A C T G C T A G A C T G A C T G A C G T G T C A
C T A G T A G C T C G A G A C T C T A G C T A G A G T C C T G A A C T G A C G T G A C T C T A G T C A G C A G T G T A C T A C G