Information for 6-CAGACTAACA (Motif 14)

A G T C C G T A A C T G C G T A A T G C G A C T C G T A C G T A A G T C C G T A
Reverse Opposite:
A C G T A C T G A C G T C G A T C T G A A T C G A C G T A G T C A C G T A C T G
p-value:1e-9
log p-value:-2.089e+01
Information Content per bp:1.907
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif1.65%
Number of Background Sequences with motif19.0
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets60.3 +/- 15.0bp
Average Position of motif in Background45.2 +/- 34.4bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:1
Score:0.69
Offset:-1
Orientation:reverse strand
Alignment:-CAGACTAACA
BCAGACWA---
 A C G T A G T C C G T A A C T G C G T A A T G C G A C T C G T A C G T A A G T C C G T A
A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T A C G T A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-CAGACTAACA
CCAGACRSVB-
 A C G T A G T C C G T A A C T G C G T A A T G C G A C T C G T A C G T A A G T C C G T A
T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C A C G T

PB0119.1_Foxa2_2/Jaspar

Match Rank:3
Score:0.64
Offset:0
Orientation:forward strand
Alignment:CAGACTAACA-----
AAAAATAACAAACGG
 A G T C C G T A A C T G C G T A A T G C G A C T C G T A C G T A A G T C C G T A A C G T A C G T A C G T A C G T A C G T
T C G A T C G A C G T A C G T A G T C A A C G T C T G A C G T A G A T C G T C A G C T A C T G A T A G C T A C G A T C G

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-CAGACTAACA
CCAGACAG---
 A C G T A G T C C G T A A C T G C G T A A T G C G A C T C G T A C G T A A G T C C G T A
A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T A C G T A C G T

Foxd3/MA0041.1/Jaspar

Match Rank:5
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:CAGACTAACA---
-AAACAAACATTC
 A G T C C G T A A C T G C G T A A T G C G A C T C G T A C G T A A G T C C G T A A C G T A C G T A C G T
A C G T C T G A T G C A C T G A G A T C G T C A C G T A C G T A G A T C C T G A C G A T C G A T G A T C

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:6
Score:0.59
Offset:-4
Orientation:reverse strand
Alignment:----CAGACTAACA
ATGCCAGACN----
 A C G T A C G T A C G T A C G T A G T C C G T A A C T G C G T A A T G C G A C T C G T A C G T A A G T C C G T A
C G T A G C A T C A T G T A G C A G T C C G T A C T A G C G T A G A T C T A G C A C G T A C G T A C G T A C G T

PB0122.1_Foxk1_2/Jaspar

Match Rank:7
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--CAGACTAACA---
CAAACAACAACACCT
 A C G T A C G T A G T C C G T A A C T G C G T A A T G C G A C T C G T A C G T A A G T C C G T A A C G T A C G T A C G T
G T A C G C T A G T C A C T G A G A T C T G C A T C G A A G T C T C G A C G T A G A T C C G T A G A T C G T A C G A C T

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:8
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:CAGACTAACA--
BTGABTGACAGS
 A G T C C G T A A C T G C G T A A T G C G A C T C G T A C G T A A G T C C G T A A C G T A C G T
A C G T C G A T A C T G C G T A A C G T A C G T A C T G C T G A A G T C C T G A T A C G A T G C

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:9
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:CAGACTAACA--
NTGATTGACAGN
 A G T C C G T A A C T G C G T A A T G C G A C T C G T A C G T A A G T C C G T A A C G T A C G T
A C G T C G A T A T C G C G T A A C G T C A G T A C T G C T G A A G T C C T G A A T C G A T C G

Spz1/MA0111.1/Jaspar

Match Rank:10
Score:0.56
Offset:1
Orientation:forward strand
Alignment:CAGACTAACA--
-AGGGTAACAGC
 A G T C C G T A A C T G C G T A A T G C G A C T C G T A C G T A A G T C C G T A A C G T A C G T
A C G T C T G A A T C G C T A G A C T G C A G T C G T A C G T A T A G C C T G A A C T G T A G C