Information for 7-SCSCACGTGTTCC (Motif 5)

A T C G A T G C T A G C A G T C C G T A A G T C A C T G A G C T A C T G A C G T A C G T A G T C A G T C
Reverse Opposite:
A C T G A C T G C G T A G T C A A G T C C T G A A G T C A C T G A C G T A C T G A T C G A T C G T A G C
p-value:1e-17
log p-value:-3.976e+01
Information Content per bp:1.910
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif1.41%
Number of Background Sequences with motif2.3
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets52.4 +/- 22.7bp
Average Position of motif in Background63.4 +/- 12.4bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0043.1_Max_1/Jaspar

Match Rank:1
Score:0.77
Offset:-3
Orientation:reverse strand
Alignment:---SCSCACGTGTTCC
CCNNANCACGTGGTCN
 A C G T A C G T A C G T A T C G A T G C T A G C A G T C C G T A A G T C A C T G A G C T A C T G A C G T A C G T A G T C A G T C
G T A C G T A C A G T C T A C G T G C A T A G C G T A C C T G A A G T C T C A G G A C T A C T G A T C G A C G T G T A C G T C A

Mlxip/MA0622.1/Jaspar

Match Rank:2
Score:0.76
Offset:2
Orientation:forward strand
Alignment:SCSCACGTGTTCC
--GCACGTGT---
 A T C G A T G C T A G C A G T C C G T A A G T C A C T G A G C T A C T G A C G T A C G T A G T C A G T C
A C G T A C G T A C T G A G T C C G T A A G T C A C T G A C G T A C T G C A G T A C G T A C G T A C G T

Npas2/MA0626.1/Jaspar

Match Rank:3
Score:0.75
Offset:1
Orientation:forward strand
Alignment:SCSCACGTGTTCC
-GGCACGTGTC--
 A T C G A T G C T A G C A G T C C G T A A G T C A C T G A G C T A C T G A C G T A C G T A G T C A G T C
A C G T C T A G T A C G A G T C C G T A G T A C C T A G A C G T C T A G A C G T G T A C A C G T A C G T

Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer

Match Rank:4
Score:0.75
Offset:1
Orientation:forward strand
Alignment:SCSCACGTGTTCC
-ACCACGTGGTNN
 A T C G A T G C T A G C A G T C C G T A A G T C A C T G A G C T A C T G A C G T A C G T A G T C A G T C
A C G T T C G A T G A C A G T C C G T A A G T C C T A G A C G T A C T G A C T G A G C T A G T C G C A T

MF0007.1_bHLH(zip)_class/Jaspar

Match Rank:5
Score:0.75
Offset:3
Orientation:reverse strand
Alignment:SCSCACGTGTTCC
---CACGTGNT--
 A T C G A T G C T A G C A G T C C G T A A G T C A C T G A G C T A C T G A C G T A C G T A G T C A G T C
A C G T A C G T A C G T G A T C C G T A A T G C T A C G G A C T C T A G A T C G A G C T A C G T A C G T

MAX/MA0058.3/Jaspar

Match Rank:6
Score:0.74
Offset:1
Orientation:reverse strand
Alignment:SCSCACGTGTTCC
-NNCACGTGGT--
 A T C G A T G C T A G C A G T C C G T A A G T C A C T G A G C T A C T G A C G T A C G T A G T C A G T C
A C G T C T G A T A C G T G A C C T G A A G T C T C A G G A C T A C T G A C T G A C G T A C G T A C G T

CLOCK/MA0819.1/Jaspar

Match Rank:7
Score:0.74
Offset:1
Orientation:reverse strand
Alignment:SCSCACGTGTTCC
-AACACGTGTT--
 A T C G A T G C T A G C A G T C C G T A A G T C A C T G A G C T A C T G A C G T A C G T A G T C A G T C
A C G T C T G A T C G A T G A C T C G A A G T C C T A G A G C T A C T G A G C T G A C T A C G T A C G T

c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer

Match Rank:8
Score:0.74
Offset:2
Orientation:reverse strand
Alignment:SCSCACGTGTTCC
--CCACGTGGNN-
 A T C G A T G C T A G C A G T C C G T A A G T C A C T G A G C T A C T G A C G T A C G T A G T C A G T C
A C G T A C G T T A G C A G T C C G T A A G T C C T A G A G C T A C T G A T C G A G T C A G T C A C G T

NPAS(bHLH)/Liver-NPAS-ChIP-Seq(GSE39860)/Homer

Match Rank:9
Score:0.74
Offset:3
Orientation:reverse strand
Alignment:SCSCACGTGTTCC
---CACGTGBN--
 A T C G A T G C T A G C A G T C C G T A A G T C A C T G A G C T A C T G A C G T A C G T A G T C A G T C
A C G T A C G T A C G T G T A C C T G A A G T C C T A G G C A T C A T G A C G T G C T A A C G T A C G T

n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer

Match Rank:10
Score:0.74
Offset:2
Orientation:reverse strand
Alignment:SCSCACGTGTTCC
--CCACGTGGNN-
 A T C G A T G C T A G C A G T C C G T A A G T C A C T G A G C T A C T G A C G T A C G T A G T C A G T C
A C G T A C G T T A G C A G T C C G T A A G T C C T A G G C A T A C T G A T C G A G C T A T G C A C G T