Information for 19-CCCGTGCACCCTGCTG (Motif 38)

A G T C A G T C A G T C A C T G A C G T A C T G A G T C C G T A A G T C A G T C A G T C A C G T A C T G A G T C A C G T A C T G
Reverse Opposite:
A G T C C G T A A C T G A G T C C G T A A C T G A C T G A C T G A C G T A C T G A G T C C G T A A G T C A C T G A C T G A C T G
p-value:1e-1
log p-value:-4.335e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif0.18%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets64.5 +/- 24.5bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)2.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:1
Score:0.65
Offset:6
Orientation:reverse strand
Alignment:CCCGTGCACCCTGCTG--
------CCCCCTGCTGTG
 A G T C A G T C A G T C A C T G A C G T A C T G A G T C C G T A A G T C A G T C A G T C A C G T A C T G A G T C A C G T A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:2
Score:0.65
Offset:4
Orientation:forward strand
Alignment:CCCGTGCACCCTGCTG---
----GGCCYCCTGCTGDGH
 A G T C A G T C A G T C A C T G A C G T A C T G A G T C C G T A A G T C A G T C A G T C A C G T A C T G A G T C A C G T A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:3
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--CCCGTGCACCCTGCTG--
CNNBRGCGCCCCCTGSTGGC
 A C G T A C G T A G T C A G T C A G T C A C T G A C G T A C T G A G T C C G T A A G T C A G T C A G T C A C G T A C T G A G T C A C G T A C T G A C G T A C G T
T A G C A G T C T G A C A G T C C T A G A T C G A G T C C A T G T G A C A G T C G T A C A G T C A G T C G C A T C T A G A T C G G C A T A C T G A T C G G A T C

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:4
Score:0.58
Offset:9
Orientation:forward strand
Alignment:CCCGTGCACCCTGCTG---
---------CCTGCTGAGH
 A G T C A G T C A G T C A C T G A C G T A C T G A G T C C G T A A G T C A G T C A G T C A C G T A C T G A G T C A C G T A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C G T A C A G C T C T A G A G T C C G A T A C T G C G T A A C T G G T C A

CTCF/MA0139.1/Jaspar

Match Rank:5
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:CCCGTGCACCCTGCTG----
-TAGCGCCCCCTGGTGGCCA
 A G T C A G T C A G T C A C T G A C G T A C T G A G T C C G T A A G T C A G T C A G T C A C G T A C T G A G T C A C G T A C T G A C G T A C G T A C G T A C G T
A C G T A G C T C T G A A T C G G A T C C A T G G T A C G A T C G T A C G A T C G A T C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

ZIC1/MA0696.1/Jaspar

Match Rank:6
Score:0.56
Offset:4
Orientation:forward strand
Alignment:CCCGTGCACCCTGCTG--
----GACCCCCCGCTGTG
 A G T C A G T C A G T C A C T G A C G T A C T G A G T C C G T A A G T C A G T C A G T C A C G T A C T G A G T C A C G T A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A C T G T C G A G T A C G T A C G T A C A G T C G T A C G A T C T C A G A G T C A C G T T C A G G A C T A C T G

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:7
Score:0.56
Offset:0
Orientation:forward strand
Alignment:CCCGTGCACCCTGCTG----
ANAGTGCCACCTGGTGGCCA
 A G T C A G T C A G T C A C T G A C G T A C T G A G T C C G T A A G T C A G T C A G T C A C G T A C T G A G T C A C G T A C T G A C G T A C G T A C G T A C G T
T G C A A G C T C T G A A T C G G A C T C T A G G T A C G A T C G T C A A G T C G T A C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

ZIC4/MA0751.1/Jaspar

Match Rank:8
Score:0.55
Offset:4
Orientation:forward strand
Alignment:CCCGTGCACCCTGCTG---
----GACCCCCCGCTGTGC
 A G T C A G T C A G T C A C T G A C G T A C T G A G T C C G T A A G T C A G T C A G T C A C G T A C T G A G T C A C G T A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C T G T C G A G T A C G T A C G T A C G T A C G T A C G A T C C T A G A G T C C A G T C T A G G A C T A C T G G T A C

PB0206.1_Zic2_2/Jaspar

Match Rank:9
Score:0.55
Offset:6
Orientation:reverse strand
Alignment:CCCGTGCACCCTGCTG-----
------TCNCCTGCTGNGNNN
 A G T C A G T C A G T C A C T G A C G T A C T G A G T C C G T A A G T C A G T C A G T C A C G T A C T G A G T C A C G T A C T G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T G C A T A G T C A C G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G A C T C A T G C T A G

PB0205.1_Zic1_2/Jaspar

Match Rank:10
Score:0.55
Offset:6
Orientation:reverse strand
Alignment:CCCGTGCACCCTGCTG-----
------TNTCCTGCTGTGNNG
 A G T C A G T C A G T C A C T G A C G T A C T G A G T C C G T A A G T C A G T C A G T C A C G T A C T G A G T C A C G T A C T G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T G C A T A G T C C A G T T G A C G T A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G C A T C A T G T C A G