Information for 4-TCAAGATGGCGGC (Motif 3)

A G C T T G A C C T G A C G T A T C A G C G T A A C G T A C T G C T A G A G T C C T A G T C A G A G T C
Reverse Opposite:
A C T G A G T C G A T C A C T G A G T C A G T C G T C A A C G T A G T C C G A T A G C T A C T G T C G A
p-value:1e-23
log p-value:-5.503e+01
Information Content per bp:1.786
Number of Target Sequences with motif34.0
Percentage of Target Sequences with motif5.99%
Number of Background Sequences with motif227.1
Percentage of Background Sequences with motif0.53%
Average Position of motif in Targets50.7 +/- 25.4bp
Average Position of motif in Background55.7 +/- 37.4bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

YY1(Zf)/Promoter/Homer

Match Rank:1
Score:0.97
Offset:1
Orientation:forward strand
Alignment:TCAAGATGGCGGC
-CAAGATGGCGGC
 A G C T T G A C C T G A C G T A T C A G C G T A A C G T A C T G C T A G A G T C C T A G T C A G A G T C
A C G T T A G C C G T A C T G A T A C G C G T A A C G T A C T G A C T G A G T C T A C G C T A G G T A C

YY1/MA0095.2/Jaspar

Match Rank:2
Score:0.96
Offset:1
Orientation:forward strand
Alignment:TCAAGATGGCGGC
-CAAGATGGCGGC
 A G C T T G A C C T G A C G T A T C A G C G T A A C G T A C T G C T A G A G T C C T A G T C A G A G T C
A C G T T G A C C T G A T C G A T C A G C G T A A G C T C T A G C T A G G T A C A C T G T C A G G T A C

YY2/MA0748.1/Jaspar

Match Rank:3
Score:0.70
Offset:3
Orientation:reverse strand
Alignment:TCAAGATGGCGGC-
---TAATGGCGGNC
 A G C T T G A C C T G A C G T A T C A G C G T A A C G T A C T G C T A G A G T C C T A G T C A G A G T C A C G T
A C G T A C G T A C G T G C A T C T G A C G T A G C A T C T A G A C T G A T G C T A C G C T A G G C T A G A T C

E2F2/MA0864.1/Jaspar

Match Rank:4
Score:0.62
Offset:2
Orientation:forward strand
Alignment:TCAAGATGGCGGC-----
--AAAATGGCGCCATTTT
 A G C T T G A C C T G A C G T A T C A G C G T A A C G T A C T G C T A G A G T C C T A G T C A G A G T C A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C G T A C G T A C G T A C G T A C G A T A T C G A C T G A G T C A C T G A G T C A T G C G C T A G C A T C G A T C G A T G C A T

NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer

Match Rank:5
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:TCAAGATGGCGGC
AACAGATGGC---
 A G C T T G A C C T G A C G T A T C A G C G T A A C G T A C T G C T A G A G T C C T A G T C A G A G T C
C T G A T C G A A G T C G T C A A C T G T G C A G C A T A C T G A C T G A G T C A C G T A C G T A C G T

PB0193.1_Tcfe2a_2/Jaspar

Match Rank:6
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---TCAAGATGGCGGC-
AAGGCCAGATGGTCCGG
 A C G T A C G T A C G T A G C T T G A C C T G A C G T A T C A G C G T A A C G T A C T G C T A G A G T C C T A G T C A G A G T C A C G T
G C T A T C G A C T A G C A T G T A G C G T A C C T G A A C T G T C G A C G A T A C T G C A T G A G C T G A T C A T G C A T C G T C A G

E2F3/MA0469.2/Jaspar

Match Rank:7
Score:0.59
Offset:1
Orientation:forward strand
Alignment:TCAAGATGGCGGC------
-AAAAATGGCGCCATTTTT
 A G C T T G A C C T G A C G T A T C A G C G T A A C G T A C T G C T A G A G T C C T A G T C A G A G T C A C G T A C G T A C G T A C G T A C G T A C G T
A C G T C T G A T C G A C G T A C G T A C G T A C A G T A T C G A T C G A G T C A T C G A G T C T A G C G T C A G C A T C G A T G C A T A G C T A G C T

PB0164.1_Smad3_2/Jaspar

Match Rank:8
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:TCAAGATGGCGGC-----
-NAGANTGGCGGGGNGNA
 A G C T T G A C C T G A C G T A T C A G C G T A A C G T A C T G C T A G A G T C C T A G T C A G A G T C A C G T A C G T A C G T A C G T A C G T
A C G T T G A C C T G A T C A G C T G A C A T G A C G T C A T G T C A G A T G C T A C G A T C G T C A G C T A G T A G C C A T G C A G T G T C A

PB0112.1_E2F2_2/Jaspar

Match Rank:9
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:TCAAGATGGCGGC-----
-NNNNTTGGCGCCGANNN
 A G C T T G A C C T G A C G T A T C A G C G T A A C G T A C T G C T A G A G T C C T A G T C A G A G T C A C G T A C G T A C G T A C G T A C G T
A C G T T A G C T G A C A G C T A G C T C A G T G A C T C T A G A T C G G T A C A C T G T A G C G A T C C T A G G C T A T C G A A T C G C A T G

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:10
Score:0.56
Offset:-5
Orientation:reverse strand
Alignment:-----TCAAGATGGCGGC--
TGGCCACCAGGTGGCACTNT
 A C G T A C G T A C G T A C G T A C G T A G C T T G A C C T G A C G T A T C A G C G T A A C G T A C T G C T A G A G T C C T A G T C A G A G T C A C G T A C G T
G A C T C A T G C T A G G T A C G A T C C G T A T A G C G A T C C T G A A C T G T C A G C A G T C T A G C A T G G A T C C T G A T A G C G A C T T C G A A C G T