Information for 23-CCAAACGAACGCC (Motif 29)

A G T C G T A C C G T A T C G A C G T A G T A C C T A G T G C A T C G A T A G C C T A G A T G C T A G C
Reverse Opposite:
A C T G A T C G G A T C A C T G A G C T A C G T G A T C A C T G A C G T A C G T C G A T A C T G A C T G
p-value:1e-7
log p-value:-1.736e+01
Information Content per bp:1.701
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.58%
Number of Background Sequences with motif49.7
Percentage of Background Sequences with motif0.12%
Average Position of motif in Targets40.3 +/- 24.5bp
Average Position of motif in Background46.5 +/- 40.7bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:CCAAACGAACGCC
CCAGACRSVB---
 A G T C G T A C C G T A T C G A C G T A G T A C C T A G T G C A T C G A T A G C C T A G A T G C T A G C
T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C A C G T A C G T A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:CCAAACGAACGCC
CCAGACAG-----
 A G T C G T A C C G T A T C G A C G T A G T A C C T A G T G C A T C G A T A G C C T A G A T G C T A G C
A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T A C G T A C G T A C G T A C G T

NFIC/MA0161.1/Jaspar

Match Rank:3
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--CCAAACGAACGCC
TGCCAA---------
 A C G T A C G T A G T C G T A C C G T A T C G A C G T A G T A C C T A G T G C A T C G A T A G C C T A G A T G C T A G C
G C A T C A T G G A T C A G T C G T C A C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

RREB1/MA0073.1/Jaspar

Match Rank:4
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--CCAAACGAACGCC-----
CCCCAAACCACCCCCCCCCA
 A C G T A C G T A G T C G T A C C G T A T C G A C G T A G T A C C T A G T G C A T C G A T A G C C T A G A T G C T A G C A C G T A C G T A C G T A C G T A C G T
G T A C G T A C G T A C A G T C G T C A G T C A G T C A G T A C A G T C C G T A G T A C G T A C G T A C T G A C G T A C G T A C G T A C G T A C T A G C T G A C

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:5
Score:0.56
Offset:-3
Orientation:reverse strand
Alignment:---CCAAACGAACGCC
ATGCCAGACN------
 A C G T A C G T A C G T A G T C G T A C C G T A T C G A C G T A G T A C C T A G T G C A T C G A T A G C C T A G A T G C T A G C
C G T A G C A T C A T G T A G C A G T C C G T A C T A G C G T A G A T C T A G C A C G T A C G T A C G T A C G T A C G T A C G T

PB0060.1_Smad3_1/Jaspar

Match Rank:6
Score:0.55
Offset:-5
Orientation:forward strand
Alignment:-----CCAAACGAACGCC
CAAATCCAGACATCACA-
 A C G T A C G T A C G T A C G T A C G T A G T C G T A C C G T A T C G A C G T A G T A C C T A G T G C A T C G A T A G C C T A G A T G C T A G C
G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A A C G T

PB0121.1_Foxj3_2/Jaspar

Match Rank:7
Score:0.53
Offset:-5
Orientation:forward strand
Alignment:-----CCAAACGAACGCC
AACACCAAAACAAAGGA-
 A C G T A C G T A C G T A C G T A C G T A G T C G T A C C G T A T C G A C G T A G T A C C T A G T G C A T C G A T A G C C T A G A T G C T A G C
G T C A C G T A A G T C C T G A G A T C G A T C T G C A G C T A G T C A C G T A A G T C C G T A C G T A G C T A C A T G T A C G C G T A A C G T

RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer

Match Rank:8
Score:0.53
Offset:-4
Orientation:forward strand
Alignment:----CCAAACGAACGCC
NWAACCACADNN-----
 A C G T A C G T A C G T A C G T A G T C G T A C C G T A T C G A C G T A G T A C C T A G T G C A T C G A T A G C C T A G A T G C T A G C
T G A C G C T A T C G A T G C A A G T C A G T C C G T A A G T C C G T A C T G A G C T A G T A C A C G T A C G T A C G T A C G T A C G T

Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer

Match Rank:9
Score:0.53
Offset:-2
Orientation:reverse strand
Alignment:--CCAAACGAACGCC
TCCCAGMCRAGCCCC
 A C G T A C G T A G T C G T A C C G T A T C G A C G T A G T A C C T A G T G C A T C G A T A G C C T A G A T G C T A G C
A G C T A G T C A G T C A G T C C T G A T C A G T G C A G A T C T C G A C G T A A C T G A T G C G T A C G T A C G A T C

NFIX/MA0671.1/Jaspar

Match Rank:10
Score:0.53
Offset:-4
Orientation:forward strand
Alignment:----CCAAACGAACGCC
CGTGCCAAG--------
 A C G T A C G T A C G T A C G T A G T C G T A C C G T A T C G A C G T A G T A C C T A G T G C A T C G A T A G C C T A G A T G C T A G C
T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T