Information for 5-TTSCAGAAGMATG (Motif 5)

C G A T C G A T A T C G A G T C C G T A A C T G C G T A C G T A C T A G G T A C C G T A A C G T A C T G
Reverse Opposite:
A G T C C G T A A C G T A C G T A G T C A C G T A C G T A G T C A C G T A C T G A T C G C G T A C G T A
p-value:1e-15
log p-value:-3.479e+01
Information Content per bp:1.870
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif1.02%
Number of Background Sequences with motif3.2
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets51.2 +/- 23.8bp
Average Position of motif in Background55.0 +/- 16.8bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0145.1_Mafb_2/Jaspar

Match Rank:1
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---TTSCAGAAGMATG
CAATTGCAAAAATAT-
 A C G T A C G T A C G T C G A T C G A T A T C G A G T C C G T A A C T G C G T A C G T A C T A G G T A C C G T A A C G T A C T G
G T A C T C G A C G T A A C G T A C G T A C T G G A T C C T G A C G T A G C T A C G T A C G T A G C A T C T G A G C A T A C G T

OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:2
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--TTSCAGAAGMATG
ATTTGCATAACAATG
 A C G T A C G T C G A T C G A T A T C G A G T C C G T A A C T G C G T A C G T A C T A G G T A C C G T A A C G T A C T G
G C T A G C A T G A C T G C A T T C A G G T A C G C T A G C A T C T G A G C T A T A G C G C T A C T G A C G A T C T A G

Pou5f1::Sox2/MA0142.1/Jaspar

Match Rank:3
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--TTSCAGAAGMATG
ATTTGCATAACAAAG
 A C G T A C G T C G A T C G A T A T C G A G T C C G T A A C T G C G T A C G T A C T A G G T A C C G T A A C G T A C T G
G T C A G A C T G A C T G C A T T C A G T G A C G C T A C G A T C T G A G C T A A T G C G T C A T C G A C G T A T C A G

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:4
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-TTSCAGAAGMATG
ATGCCAGACN----
 A C G T C G A T C G A T A T C G A G T C C G T A A C T G C G T A C G T A C T A G G T A C C G T A A C G T A C T G
C G T A G C A T C A T G T A G C A G T C C G T A C T A G C G T A G A T C T A G C A C G T A C G T A C G T A C G T

CEBPA/MA0102.3/Jaspar

Match Rank:5
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-TTSCAGAAGMATG
ATTGCACAATA---
 A C G T C G A T C G A T A T C G A G T C C G T A A C T G C G T A C G T A C T A G G T A C C G T A A C G T A C T G
T C G A A C G T A C G T C A T G A G T C T G C A G A T C G T C A C G T A A G C T G T C A A C G T A C G T A C G T

PB0062.1_Sox12_1/Jaspar

Match Rank:6
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:TTSCAGAAGMATG-
NTTNAGAACAATTA
 C G A T C G A T A T C G A G T C C G T A A C T G C G T A C G T A C T A G G T A C C G T A A C G T A C T G A C G T
C A T G C G A T C G A T C A G T C G T A A C T G C T G A G C T A A G T C G C T A C G T A G C A T C G A T C T G A

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:7
Score:0.55
Offset:4
Orientation:reverse strand
Alignment:TTSCAGAAGMATG-
----VRAACAATGG
 C G A T C G A T A T C G A G T C C G T A A C T G C G T A C G T A C T A G G T A C C G T A A C G T A C T G A C G T
A C G T A C G T A C G T A C G T T G A C C T G A T C G A C G T A T A G C G T C A T C G A G C A T C T A G T A C G

Sox6/MA0515.1/Jaspar

Match Rank:8
Score:0.55
Offset:4
Orientation:reverse strand
Alignment:TTSCAGAAGMATG-
----AAAACAATGG
 C G A T C G A T A T C G A G T C C G T A A C T G C G T A C G T A C T A G G T A C C G T A A C G T A C T G A C G T
A C G T A C G T A C G T A C G T T C G A C T G A T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G

POL008.1_DCE_S_I/Jaspar

Match Rank:9
Score:0.55
Offset:4
Orientation:reverse strand
Alignment:TTSCAGAAGMATG
----NGAAGC---
 C G A T C G A T A T C G A G T C C G T A A C T G C G T A C G T A C T A G G T A C C G T A A C G T A C T G
A C G T A C G T A C G T A C G T T A C G T A C G T G C A T C G A T A C G T G A C A C G T A C G T A C G T

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:10
Score:0.55
Offset:5
Orientation:reverse strand
Alignment:TTSCAGAAGMATG--
-----GAACAATGGN
 C G A T C G A T A T C G A G T C C G T A A C T G C G T A C G T A C T A G G T A C C G T A A C G T A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C T A G T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G T A C G