Information for 17-DACMTTTCTGRGMTCT (Motif 22)

C G T A T G C A G T A C G T A C G C A T A G C T C G A T A T G C C G A T A T C G C T A G C A T G G T A C A C G T A G T C A G C T
Reverse Opposite:
C T G A T C A G T G C A A C G T G T A C G A T C T A G C C G T A T A C G C G T A T C G A C G T A A C G T A C T G A C G T G C A T
p-value:1e-10
log p-value:-2.345e+01
Information Content per bp:1.585
Number of Target Sequences with motif35.0
Percentage of Target Sequences with motif5.35%
Number of Background Sequences with motif663.1
Percentage of Background Sequences with motif1.43%
Average Position of motif in Targets53.4 +/- 24.9bp
Average Position of motif in Background48.8 +/- 30.1bp
Strand Bias (log2 ratio + to - strand density)-0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox2/MA0143.3/Jaspar

Match Rank:1
Score:0.58
Offset:2
Orientation:forward strand
Alignment:DACMTTTCTGRGMTCT
--CCTTTGTT------
 C G T A T G C A G T A C G T A C G C A T A G C T C G A T A T G C C G A T A T C G C T A G C A T G G T A C A C G T A G T C A G C T
A C G T A C G T A G T C A G T C C G A T A C G T A C G T A C T G A C G T A G C T A C G T A C G T A C G T A C G T A C G T A C G T

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:2
Score:0.55
Offset:2
Orientation:forward strand
Alignment:DACMTTTCTGRGMTCT
--CCWTTGTY------
 C G T A T G C A G T A C G T A C G C A T A G C T C G A T A T G C C G A T A T C G C T A G C A T G G T A C A C G T A G T C A G C T
A C G T A C G T A T G C G A T C C G A T A C G T A C G T A C T G C A G T A G C T A C G T A C G T A C G T A C G T A C G T A C G T

Rarb(var.2)/MA0858.1/Jaspar

Match Rank:3
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-DACMTTTCTGRGMTCT
TGACCTTTANTTGACCT
 A C G T C G T A T G C A G T A C G T A C G C A T A G C T C G A T A T G C C G A T A T C G C T A G C A T G G T A C A C G T A G T C A G C T
G A C T C T A G T G C A T G A C A G T C G A C T A G C T G C A T T C G A A C T G C A G T A G C T A T C G C T G A G T A C A T G C A G C T

PB0166.1_Sox12_2/Jaspar

Match Rank:4
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-DACMTTTCTGRGMTCT
ANTCCTTTGTCTNNNN-
 A C G T C G T A T G C A G T A C G T A C G C A T A G C T C G A T A T G C C G A T A T C G C T A G C A T G G T A C A C G T A G T C A G C T
C G T A G C A T A C G T A G T C A T G C C G A T A G C T C G A T T C A G A C G T T A G C G A C T T C A G G C A T A C G T A C G T A C G T

PB0168.1_Sox14_2/Jaspar

Match Rank:5
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-DACMTTTCTGRGMTCT
NNNCCATTGTGTNAN--
 A C G T C G T A T G C A G T A C G T A C G C A T A G C T C G A T A T G C C G A T A T C G C T A G C A T G G T A C A C G T A G T C A G C T
A T C G T G A C A C T G A G T C G A T C C G T A A C G T A C G T T A C G G C A T A T C G A G C T T C A G T G C A T C A G A C G T A C G T

Sox3/MA0514.1/Jaspar

Match Rank:6
Score:0.53
Offset:2
Orientation:forward strand
Alignment:DACMTTTCTGRGMTCT
--CCTTTGTTTT----
 C G T A T G C A G T A C G T A C G C A T A G C T C G A T A T G C C G A T A T C G C T A G C A T G G T A C A C G T A G T C A G C T
A C G T A C G T A T G C A G T C C G A T A C G T A C G T A T C G A C G T A G C T A G C T A G C T A C G T A C G T A C G T A C G T

PB0137.1_Irf3_2/Jaspar

Match Rank:7
Score:0.52
Offset:-3
Orientation:reverse strand
Alignment:---DACMTTTCTGRGMTCT
NNGCACCTTTCTCC-----
 A C G T A C G T A C G T C G T A T G C A G T A C G T A C G C A T A G C T C G A T A T G C C G A T A T C G C T A G C A T G G T A C A C G T A G T C A G C T
A G C T G A T C T C A G T A G C G C T A A T G C T A G C G C A T C G A T G C A T G A T C G C A T G T A C G A T C A C G T A C G T A C G T A C G T A C G T

SOX10/MA0442.1/Jaspar

Match Rank:8
Score:0.51
Offset:3
Orientation:forward strand
Alignment:DACMTTTCTGRGMTCT
---CTTTGT-------
 C G T A T G C A G T A C G T A C G C A T A G C T C G A T A T G C C G A T A T C G C T A G C A T G G T A C A C G T A G T C A G C T
A C G T A C G T A C G T A G T C C G A T A C G T A C G T A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Twist2/MA0633.1/Jaspar

Match Rank:9
Score:0.51
Offset:0
Orientation:forward strand
Alignment:DACMTTTCTGRGMTCT
ACCATATGTT------
 C G T A T G C A G T A C G T A C G C A T A G C T C G A T A T G C C G A T A T C G C T A G C A T G G T A C A C G T A G T C A G C T
C T G A G T A C A G T C C G T A A G C T C T G A A C G T A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:10
Score:0.51
Offset:2
Orientation:forward strand
Alignment:DACMTTTCTGRGMTCT
--CCWTTGTYYB----
 C G T A T G C A G T A C G T A C G C A T A G C T C G A T A T G C C G A T A T C G C T A G C A T G G T A C A C G T A G T C A G C T
A C G T A C G T A T G C A G T C G C A T A G C T A C G T T C A G C G A T A G C T G A T C A T C G A C G T A C G T A C G T A C G T