Information for 20-GAGAGTAATA (Motif 19)

C T A G C G T A T C A G C G T A T C A G C G A T C T G A C G T A C A G T G C T A
Reverse Opposite:
C A G T G T C A C G A T G A C T G C T A A G T C G C A T A G T C G C A T A G T C
p-value:1e-23
log p-value:-5.407e+01
Information Content per bp:1.655
Number of Target Sequences with motif26.0
Percentage of Target Sequences with motif3.96%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets54.0 +/- 27.4bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0140.1_Irf6_2/Jaspar

Match Rank:1
Score:0.64
Offset:-6
Orientation:reverse strand
Alignment:------GAGAGTAATA
NNNACCGAGAGTNNN-
 A C G T A C G T A C G T A C G T A C G T A C G T C T A G C G T A T C A G C G T A T C A G C G A T C T G A C G T A C A G T G C T A
A T C G G A C T C A T G G T C A A G T C G A T C C T A G T C G A T A C G G T C A C A T G C G A T T C A G T A C G A C G T A C G T

PB0138.1_Irf4_2/Jaspar

Match Rank:2
Score:0.60
Offset:-6
Orientation:reverse strand
Alignment:------GAGAGTAATA
GNNACCGAGAATNNN-
 A C G T A C G T A C G T A C G T A C G T A C G T C T A G C G T A T C A G C G T A T C A G C G A T C T G A C G T A C A G T G C T A
A T C G G T A C C T G A G C T A A G T C A G T C C A T G T C G A C A T G G C T A C T G A C G A T T C G A A T G C A G C T A C G T

MF0010.1_Homeobox_class/Jaspar

Match Rank:3
Score:0.60
Offset:3
Orientation:forward strand
Alignment:GAGAGTAATA
---AATAATT
 C T A G C G T A T C A G C G T A T C A G C G A T C T G A C G T A C A G T G C T A
A C G T A C G T A C G T G C T A C G T A G C A T C T G A C T G A C G A T C G A T

PB0139.1_Irf5_2/Jaspar

Match Rank:4
Score:0.59
Offset:-6
Orientation:forward strand
Alignment:------GAGAGTAATA
TTGACCGAGAATTCC-
 A C G T A C G T A C G T A C G T A C G T A C G T C T A G C G T A T C A G C G T A T C A G C G A T C T G A C G T A C A G T G C T A
A G C T G C A T C T A G C G T A G A C T G T A C C T A G C T G A A T C G C G T A C T G A G A C T G A C T A G T C T A G C A C G T

IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer

Match Rank:5
Score:0.58
Offset:0
Orientation:forward strand
Alignment:GAGAGTAATA--
GAAAGTGAAAGT
 C T A G C G T A T C A G C G T A T C A G C G A T C T G A C G T A C A G T G C T A A C G T A C G T
T C A G C T G A C G T A C G T A T A C G G C A T C T A G C T G A C G T A C G T A T A C G G A C T

SPIB/MA0081.1/Jaspar

Match Rank:6
Score:0.57
Offset:1
Orientation:forward strand
Alignment:GAGAGTAATA
-AGAGGAA--
 C T A G C G T A T C A G C G T A T C A G C G A T C T G A C G T A C A G T G C T A
A C G T C G T A T A C G T G C A C T A G C A T G C G T A C G T A A C G T A C G T

PB0072.1_Sox5_1/Jaspar

Match Rank:7
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--GAGAGTAATA----
TTTAGAACAATAAAAT
 A C G T A C G T C T A G C G T A T C A G C G T A T C A G C G A T C T G A C G T A C A G T G C T A A C G T A C G T A C G T A C G T
C G A T G C A T C A G T C T G A C T A G T C G A C G T A A G T C C G T A C G T A G C A T C G T A C T G A C G T A G C T A C G A T

PH0138.1_Pitx2/Jaspar

Match Rank:8
Score:0.57
Offset:-4
Orientation:forward strand
Alignment:----GAGAGTAATA---
TGAAGGGATTAATCATC
 A C G T A C G T A C G T A C G T C T A G C G T A T C A G C G T A T C A G C G A T C T G A C G T A C A G T G C T A A C G T A C G T A C G T
C A G T C A T G C G T A T C G A T C A G C T A G C A T G G T C A A G C T G A C T C G T A C T G A A G C T G A T C C T G A C G A T G A T C

PH0130.1_Otx2/Jaspar

Match Rank:9
Score:0.56
Offset:-4
Orientation:forward strand
Alignment:----GAGAGTAATA---
TGTAGGGATTAATTGTC
 A C G T A C G T A C G T A C G T C T A G C G T A T C A G C G T A T C A G C G A T C T G A C G T A C A G T G C T A A C G T A C G T A C G T
C A G T C T A G C G A T T C G A T C A G T C A G C A T G G T C A C G A T C G A T C G T A C T G A A G C T G A C T C T A G C A G T G A T C

Arid3b/MA0601.1/Jaspar

Match Rank:10
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:GAGAGTAATA-
NTAATTAATAT
 C T A G C G T A T C A G C G T A T C A G C G A T C T G A C G T A C A G T G C T A A C G T
A C G T A C G T C G T A C G T A C G A T A C G T C G T A C G T A C G A T C G T A A C G T