Information for 13-TAAAAAGAAATTA (Motif 17)

C G A T T C G A G C T A G C T A C G T A C T G A A C T G G C T A T G C A C G T A C G A T A G C T C G T A
Reverse Opposite:
C G A T T C G A G C T A C G A T A C G T C G A T T G A C G A C T G C A T C G A T C G A T A G C T G C T A
p-value:1e-25
log p-value:-5.904e+01
Information Content per bp:1.633
Number of Target Sequences with motif50.0
Percentage of Target Sequences with motif7.62%
Number of Background Sequences with motif5.1
Percentage of Background Sequences with motif1.10%
Average Position of motif in Targets54.7 +/- 25.2bp
Average Position of motif in Background61.4 +/- 16.3bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0006.1_Barhl2/Jaspar

Match Rank:1
Score:0.71
Offset:1
Orientation:forward strand
Alignment:TAAAAAGAAATTA----
-AAAAACCAATTAAGAA
 C G A T T C G A G C T A G C T A C G T A C T G A A C T G G C T A T G C A C G T A C G A T A G C T C G T A A C G T A C G T A C G T A C G T
A C G T G T C A G T C A G T C A C T G A T C G A G A T C A G T C C T G A G C T A A C G T A C G T C G T A C T G A A T C G G C T A G C T A

PH0005.1_Barhl1/Jaspar

Match Rank:2
Score:0.70
Offset:1
Orientation:forward strand
Alignment:TAAAAAGAAATTA----
-AACAACCAATTAATTC
 C G A T T C G A G C T A G C T A C G T A C T G A A C T G G C T A T G C A C G T A C G A T A G C T C G T A A C G T A C G T A C G T A C G T
A C G T G T C A C T G A G T A C T C G A C T G A A T G C G A T C C T G A G C T A A C G T G A C T C G T A C T G A A C G T C G A T G A T C

PH0108.1_Msx3/Jaspar

Match Rank:3
Score:0.70
Offset:1
Orientation:forward strand
Alignment:TAAAAAGAAATTA----
-CAAAACCAATTAATTT
 C G A T T C G A G C T A G C T A C G T A C T G A A C T G G C T A T G C A C G T A C G A T A G C T C G T A A C G T A C G T A C G T A C G T
A C G T T G A C T C G A G T C A C T G A T C G A A T G C A G T C C T G A G T C A C G A T G A C T C G T A C T G A A C G T G A C T G C A T

PB0182.1_Srf_2/Jaspar

Match Rank:4
Score:0.66
Offset:-4
Orientation:forward strand
Alignment:----TAAAAAGAAATTA
GTTAAAAAAAAAAATTA
 A C G T A C G T A C G T A C G T C G A T T C G A G C T A G C T A C G T A C T G A A C T G G C T A T G C A C G T A C G A T A G C T C G T A
T A C G A C G T C G A T C G T A C T G A C T G A T G C A T G C A G T C A G C T A G T C A G T C A G T C A T G C A A C G T G C A T G C A T

STAT1::STAT2/MA0517.1/Jaspar

Match Rank:5
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-TAAAAAGAAATTA-
GGAAANTGAAACTNA
 A C G T C G A T T C G A G C T A G C T A C G T A C T G A A C T G G C T A T G C A C G T A C G A T A G C T C G T A A C G T
T C A G C T A G C T G A C G T A T C G A T G C A G A C T C T A G T C G A C G T A C T G A A T G C G A C T C T A G G T C A

IRF3(IRF)/BMDM-Irf3-ChIP-Seq(GSE67343)/Homer

Match Rank:6
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:TAAAAAGAAATTA
GAAAMTGAAACT-
 C G A T T C G A G C T A G C T A C G T A C T G A A C T G G C T A T G C A C G T A C G A T A G C T C G T A
C T A G T C G A C T G A G T C A T G A C A G C T T C A G T C G A C T G A C G T A A T G C G A C T A C G T

PB0116.1_Elf3_2/Jaspar

Match Rank:7
Score:0.63
Offset:-4
Orientation:forward strand
Alignment:----TAAAAAGAAATTA
GTTCAAAAAAAAAATTC
 A C G T A C G T A C G T A C G T C G A T T C G A G C T A G C T A C G T A C T G A A C T G G C T A T G C A C G T A C G A T A G C T C G T A
C A T G A G C T A C G T G T A C G T C A C G T A G C T A G C T A G C T A G C T A G C T A G C T A G C T A G T C A G A C T C G A T G A T C

IRF7/MA0772.1/Jaspar

Match Rank:8
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--TAAAAAGAAATTA
ACGAAAGCGAAAGT-
 A C G T A C G T C G A T T C G A G C T A G C T A C G T A C T G A A C T G G C T A T G C A C G T A C G A T A G C T C G T A
G T C A T G A C A C T G T G C A C G T A G T C A T C A G G A T C C T A G G T C A T C G A G C T A T C A G G C A T A C G T

IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer

Match Rank:9
Score:0.61
Offset:0
Orientation:forward strand
Alignment:TAAAAAGAAATTA
GAAAGTGAAAGT-
 C G A T T C G A G C T A G C T A C G T A C T G A A C T G G C T A T G C A C G T A C G A T A G C T C G T A
T C A G C T G A C G T A C G T A T A C G G C A T C T A G C T G A C G T A C G T A T A C G G A C T A C G T

Prop1(Homeobox)/GHFT1-PROP1.biotin-ChIP-Seq(GSE77302)/Homer

Match Rank:10
Score:0.61
Offset:1
Orientation:forward strand
Alignment:TAAAAAGAAATTA
-NTAATBNAATTA
 C G A T T C G A G C T A G C T A C G T A C T G A A C T G G C T A T G C A C G T A C G A T A G C T C G T A
A C G T G T A C G C A T C T G A C G T A G A C T A G C T C A T G T G C A C T G A A C G T G A C T C G T A