Information for 2-AGCACACGCTACATTT (Motif 3)

C G T A A C T G A T G C T C G A A G T C G T C A A T G C T A C G A G T C A G C T C T G A G T A C C G T A A C G T A C G T A C G T
Reverse Opposite:
C G T A C G T A C G T A C G A T A C T G A G C T C T G A A C T G A T G C T A C G A C G T A C T G A G C T T A C G T A G C A C G T
p-value:1e-13
log p-value:-3.134e+01
Information Content per bp:1.767
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.76%
Number of Background Sequences with motif0.7
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets59.5 +/- 21.1bp
Average Position of motif in Background58.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

KLF13/MA0657.1/Jaspar

Match Rank:1
Score:0.56
Offset:0
Orientation:forward strand
Alignment:AGCACACGCTACATTT--
ATGCCACGCCCCTTTTTG
 C G T A A C T G A T G C T C G A A G T C G T C A A T G C T A C G A G T C A G C T C T G A G T A C C G T A A C G T A C G T A C G T A C G T A C G T
C T G A C A G T C T A G G T A C G T A C C T G A A T G C C T A G A G T C G T A C G A T C G T A C A G C T G A C T C A G T C A G T C A G T C A T G

PB0171.1_Sox18_2/Jaspar

Match Rank:2
Score:0.51
Offset:5
Orientation:forward strand
Alignment:AGCACACGCTACATTT-----
-----GGACTGAATTCATGCC
 C G T A A C T G A T G C T C G A A G T C G T C A A T G C T A C G A G T C A G C T C T G A G T A C C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C T A G A C T G C T G A A T G C A G C T C T A G G T C A C T G A G A C T C A G T G A T C T C G A C G A T C T A G G T A C T G A C

Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer

Match Rank:3
Score:0.50
Offset:7
Orientation:forward strand
Alignment:AGCACACGCTACATTT---
-------GCTATTTTTAGC
 C G T A A C T G A T G C T C G A A G T C G T C A A T G C T A C G A G T C A G C T C T G A G T A C C G T A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C A T G A G T C A G C T C G T A C G A T C G A T G C A T G C A T C G A T C T G A C A T G T G A C

MF0008.1_MADS_class/Jaspar

Match Rank:4
Score:0.49
Offset:8
Orientation:forward strand
Alignment:AGCACACGCTACATTT--
--------CCATATATGG
 C G T A A C T G A T G C T C G A A G T C G T C A A T G C T A C G A G T C A G C T C T G A G T A C C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A T C A G T C G C T A C G A T C G T A C G A T C G T A G C A T C T A G C A T G

Ahr::Arnt/MA0006.1/Jaspar

Match Rank:5
Score:0.49
Offset:4
Orientation:reverse strand
Alignment:AGCACACGCTACATTT
----CACGCA------
 C G T A A C T G A T G C T C G A A G T C G T C A A T G C T A C G A G T C A G C T C T G A G T A C C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A G T C C G T A G T A C C T A G G T A C C T G A A C G T A C G T A C G T A C G T A C G T A C G T

Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer

Match Rank:6
Score:0.49
Offset:7
Orientation:reverse strand
Alignment:AGCACACGCTACATTT---
-------KCTATTTTTRGH
 C G T A A C T G A T G C T C G A A G T C G T C A A T G C T A C G A G T C A G C T C T G A G T A C C G T A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C A T G A G T C G A C T C G T A C G A T G C A T G C A T G C A T C G A T C T G A C A T G G T A C

PB0154.1_Osr1_2/Jaspar

Match Rank:7
Score:0.49
Offset:3
Orientation:forward strand
Alignment:AGCACACGCTACATTT---
---ACATGCTACCTAATAC
 C G T A A C T G A T G C T C G A A G T C G T C A A T G C T A C G A G T C A G C T C T G A G T A C C G T A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C T G A G A T C G C T A G A C T T C A G G A T C A G C T C G T A G T A C G A T C G C A T T C G A G T C A C G A T G T C A T G A C

PB0147.1_Max_2/Jaspar

Match Rank:8
Score:0.48
Offset:0
Orientation:forward strand
Alignment:AGCACACGCTACATTT
GTGCCACGCGACTG--
 C G T A A C T G A T G C T C G A A G T C G T C A A T G C T A C G A G T C A G C T C T G A G T A C C G T A A C G T A C G T A C G T
A C T G A G C T A C T G G A T C A G T C C G T A A G T C T C A G G A T C A C T G T C G A T G A C C A G T C A T G A C G T A C G T

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer

Match Rank:9
Score:0.48
Offset:1
Orientation:forward strand
Alignment:AGCACACGCTACATTT
-TBGCACGCAA-----
 C G T A A C T G A T G C T C G A A G T C G T C A A T G C T A C G A G T C A G C T C T G A G T A C C G T A A C G T A C G T A C G T
A C G T G C A T A T C G C A T G G T A C G C T A A G T C T C A G T G A C G T C A T G C A A C G T A C G T A C G T A C G T A C G T

DMRT3/MA0610.1/Jaspar

Match Rank:10
Score:0.48
Offset:4
Orientation:reverse strand
Alignment:AGCACACGCTACATTT
----NTTGATACATT-
 C G T A A C T G A T G C T C G A A G T C G T C A A T G C T A C G A G T C A G C T C T G A G T A C C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C G T A C G A T A C G T A C T G G C T A A C G T C G T A A G T C C G T A C G A T A C G T A C G T